Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00983 ATGGTAGATAGTAACAATCCGGGTCATCAATACAATGACACGACATTTACTAAGATTTTTGTTGGAGGGTTGGCTTGGGAGACTCAAAGGGATACAATGAGAAGGTACTTTGAGCAGTTTGGAGAGATTGTAGAGGCTGTTGTTATCACAGACAAAAACACCGGGAGATCCAAAGGCTATGGCTTTGTTACGTTTAAAGATCCAGGGGCAGCTATGATGGCATGCCAGAATCCATCTCCTGTAATTGATGGAAGAAGAGCAAATTGCAATCTTGCTTCTCTTGGTGCAAGCAAGGCGCATCCAACTACTCCTCAACACGGTCTGGGAAGGTTTAGACCAGCGACAGAACTGGTGGCGCCACCTGCTTATCATGATAGCTCATCCTTCATTCAACAATCAGCTGCACACTACTCATTTCCTTACTCAGCCTACGGGTATTCCGGGTATTCACAAGATAATACCATGTACCCAATGAATTATTACTGTTTCTATGGTGGGGGTGGTCAACAGTTCTCGCCTTATTCCACTTCGATTGGGGCATCTGGGCAGCCAGGGATGATCCCATGTTTTTATCCATACAATGTTCAGCATGCACTGACCAATCAGACTCATGGATATGGCATCCAATACCCCCAGATGATGCAGTTTCTTTTTTTGCCACAGCATTATGGCTCTGCGGGGATTCTGTCACTTCCTTCTTCAATGGCAATGCCAGCTACTATTCCAGGTGATCCATCAACCACCGTCTACTTTATCAAGTAA 762 0.4514 MVDSNNPGHQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKDPGAAMMACQNPSPVIDGRRANCNLASLGASKAHPTTPQHGLGRFRPATELVAPPAYHDSSSFIQQSAAHYSFPYSAYGYSGYSQDNTMYPMNYYCFYGGGGQQFSPYSTSIGASGQPGMIPCFYPYNVQHALTNQTHGYGIQYPQMMQFLFLPQHYGSAGILSLPSSMAMPATIPGDPSTTVYFIK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00983 253 SUPERFAMILY RNA-binding domain, RBD 16 104 IPR035979 GO:0003676
Pte4g00983 253 PANTHER BOULE-RELATED 7 215 - -
Pte4g00983 253 CDD RRM_RBM24_RBM38_like 17 92 - -
Pte4g00983 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Pte4g00983 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Pte4g00983 253 Gene3D - 3 106 IPR012677 -
Pte4g00983 253 SMART rrm1_1 18 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00983 Pte-Chr4 41031113 41032477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00983 13 99 C2H2 Transcription Factor Family AT2G19380 43.678 2.53e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00983 - - qsa:O6P43_018526 369.392