Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00982 ATGAGTATATCTGTGAATGGACAATCTCAGGTGCCTCCAGGATTCAGGTTTCATCCAACAGAGGAAGAACTTTTGGATTATTATCTGAGGAAGAAAGTTTCTTATGAGAAGATTGACCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTGGAGCCTTGGGATATTCAAGAAAAGTGCAAAATAGGAACCACTCCCCAGAATGATTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCTACAGGAACTCGGACCAATAGAGCCACGGCCGTCGGATTCTGGAAGGCGACAGGCCGTGATAAGGTGATATTCAGCAACTGCAGGCGGATTGGAATGAGGAAAACTCTTGTTTTCTATAAAGGCCGAGCTCCACATGGCTTGAAGTCAGATTGGATCATGCATGAGTACAGATTTGACGACAACACCAGCACTGATGCCAACATAGTCTCCAGTGTGATGGGAGAGACAGCACAAGAAGAAGGGTGGGTGGTATGCAGAATATTCAAGAAGAAGAACCACCTGAAAACCCTAGAGAGCCCAGGTAATGAATCGAGAGGTAGTCATATCTGTGATTTAGGTAATGAAGGAACTTTGGAGCAAATACTTCAGCAAATGGGAAGGACTTGCAATGAAGTTAATGTCAAGCAAGGAAGTTCATCTCTCCGGCCAATTGACACGGGTATGAACAATGACTATTTCCAGGACAGGTTTTTCAAGCTTCCAAGATTAGAAAGCCCCGTCGCAGCAAGTAGTCAGACCTGTTACCAACCAATCATACAAGAGCTAACTCCAGAAAATAAAGTGTCAATCGGAAATCATCAGCGAGTAAATGGTAACAGTAACACTATTACAGCTGACAGGAACTTGGGATACCAAATGGATTCATCTGGTTCGTCAGCTGGTCTTACCAACTGGGCAGCACTTGATCGCCTTGTTGCTTCTCAGCTCAATGGTTGTCAAACTGAGTCTTCTAGACAACTAGCTTGCTTCAGTGAACCCACCATGGAAGGTTATTGCAATACAGCTGATGAGCATGATCATCTTCAATTACCAACTTTAAGATCAACATCATCATCTCCATCAACAACAACATCATCATCGTCCCAAAGAGCCAATTACATCAATCCAACCATGGACTACAACAGTGAAATTGACCTATGGAGTTTTGCCCGATCAACATCATCTTTGCCAAATGTTGAAAATGGCCATGCATAA 1218 0.431 MSISVNGQSQVPPGFRFHPTEEELLDYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAVGFWKATGRDKVIFSNCRRIGMRKTLVFYKGRAPHGLKSDWIMHEYRFDDNTSTDANIVSSVMGETAQEEGWVVCRIFKKKNHLKTLESPGNESRGSHICDLGNEGTLEQILQQMGRTCNEVNVKQGSSSLRPIDTGMNNDYFQDRFFKLPRLESPVAASSQTCYQPIIQELTPENKVSIGNHQRVNGNSNTITADRNLGYQMDSSGSSAGLTNWAALDRLVASQLNGCQTESSRQLACFSEPTMEGYCNTADEHDHLQLPTLRSTSSSPSTTTSSSSQRANYINPTMDYNSEIDLWSFARSTSSLPNVENGHA* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00982 405 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 297 - -
Pte4g00982 405 MobiDBLite consensus disorder prediction 353 374 - -
Pte4g00982 405 FunFam NAC domain-containing protein 20 175 - -
Pte4g00982 405 SUPERFAMILY NAC domain 7 171 IPR036093 GO:0003677|GO:0006355
Pte4g00982 405 Gene3D NAC domain 20 176 IPR036093 GO:0003677|GO:0006355
Pte4g00982 405 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Pte4g00982 405 ProSiteProfiles NAC domain profile. 11 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00982 Pte-Chr4 41021367 41023325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00982 1 388 NAC Transcription Factor Family AT2G46770 53.500 4.72e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte4g00982 NAM 7.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00982 - - gmx:100793308 498.049