Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00980 ATGTCACAAGGAGCCGAAATTGAAGATCGTGTAGATTATGACGAGGAAAATTACATGGAGGAGATGGATGATGATGTTGAGGAACAGGTAGATGAGGATGGTTCTGATGGAGGTGTTGATGAAAACAATGAAGAGAGTATTGAAGAAGAAGAAGAATTACTTGAAGATGCACCAGCAGAGGCTAATGAGAAAGATCATCCTGAATCAGACAAGGGTGAGGTAGCTGTTGAATCAGTGGAAGATGAACAGAAGCCCGCTGCTTCAATTGATGAAGATGAAAGGGAGGAACATGATCAACTTCTCGCACTTCCTCCTCATGGTTCTGAAGTTTTCATTGGGGGACTTCTTCGCGATGTGTCTGAAGACGATTTACGTGACCTATGTGAACCATTAGGTGAAACTTTGGAGGTGAGATTAATGAAAGATAAGGAAACAGGGGAAGGCAAGGGATATGCTTTTGTAGCATTTAAAACAAAAGAGGTCGCACAAAATGTCATTGAAGCATTGCACAACAAAGAATTCAAGGGTAGATCCTTGAGATGTTCACTCTCAGAAACTAAACACAGACTGTTCATTGGGAATGTTCCGAAGAACTGGACAGAAGATGAGTTTCGTAAAGTCATTCATGGTGTTGGTCCTGGAGTTGAGAATATTGAGCTCATAAAGGACCCACAAAATCCAGGCAGGAATCGAGGGTTTGCTTTTGTCTTGTACTACAACAATGCTTGTGCTGATTATTCGAGGCAGAAGATGTCAAATGCAAATTTTAAGCTGGAGGGGAACTCACCAACTGTCACATGGGCTGATCCTAAGACTTCACCTGATCAATCTGCTTCTGCACAGGTAAAAGCTCTTTATGTGAAGAACATTCCCGACAATACTACCACTGAACAACTGAAGGAACTGTTTTCTCACCATGGAGAAGTGACAAAAGTAGTCATGCCACCTGGGAGAAATGGGGGGAAACGCGATTTTGGTTTCATCCACTATGCTGAGAGATCTAGCGCATTGAAGGCTGTCAAAGATACAGAGAAATATGAAATAGATGGTCAAATATTGGAAGTTGTTCTTGCTAAGCCGCAAACGGAAAAGAAGCCTGATGCACATTCTTACAACCCAGGGTCTCATGCAAACCATGTTCCCCATCCTGCCTTCAGTGGCTTTCCGCCAAATGCATATGGGTCCGTAAGAGCTGGATATGGGGTTGCTGCTAGTTTTCAGCAGCCAATGATATATGGTCGCGGTCCAATGCCAGCTGGAATGCAAATGGTGCCGATGGTTTTACCAGATGGGCGGATTGGTTATGTTCTCCAACAGCCTGGTGTACAGATGCCATCGCCACCAAGACCTCGTAGAAGCAACGGTCCAAGTGGTCTGTCCGGAAGAGGAGATGGCGGTGATGAAGGCAACCGCAACAGGAGATACCGACCATACTAG 1437 0.4454 MSQGAEIEDRVDYDEENYMEEMDDDVEEQVDEDGSDGGVDENNEESIEEEEELLEDAPAEANEKDHPESDKGEVAVESVEDEQKPAASIDEDEREEHDQLLALPPHGSEVFIGGLLRDVSEDDLRDLCEPLGETLEVRLMKDKETGEGKGYAFVAFKTKEVAQNVIEALHNKEFKGRSLRCSLSETKHRLFIGNVPKNWTEDEFRKVIHGVGPGVENIELIKDPQNPGRNRGFAFVLYYNNACADYSRQKMSNANFKLEGNSPTVTWADPKTSPDQSASAQVKALYVKNIPDNTTTEQLKELFSHHGEVTKVVMPPGRNGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQILEVVLAKPQTEKKPDAHSYNPGSHANHVPHPAFSGFPPNAYGSVRAGYGVAASFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMPSPPRPRRSNGPSGLSGRGDGGDEGNRNRRYRPY* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00980 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 270 IPR000504 GO:0003723
Pte4g00980 478 MobiDBLite consensus disorder prediction 438 478 - -
Pte4g00980 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Pte4g00980 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 351 IPR000504 GO:0003723
Pte4g00980 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 257 IPR000504 GO:0003723
Pte4g00980 478 SUPERFAMILY RNA-binding domain, RBD 189 276 IPR035979 GO:0003676
Pte4g00980 478 Gene3D - 271 401 IPR012677 -
Pte4g00980 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 360 IPR000504 GO:0003723
Pte4g00980 478 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 188 - -
Pte4g00980 478 Gene3D - 7 188 IPR012677 -
Pte4g00980 478 SMART rrm1_1 284 356 IPR000504 GO:0003723
Pte4g00980 478 SMART rrm1_1 189 266 IPR000504 GO:0003723
Pte4g00980 478 SMART rrm1_1 109 182 IPR000504 GO:0003723
Pte4g00980 478 Gene3D - 189 269 IPR012677 -
Pte4g00980 478 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 189 269 - -
Pte4g00980 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 417 - -
Pte4g00980 478 SUPERFAMILY RNA-binding domain, RBD 105 362 IPR035979 GO:0003676
Pte4g00980 478 MobiDBLite consensus disorder prediction 361 383 - -
Pte4g00980 478 MobiDBLite consensus disorder prediction 1 97 - -
Pte4g00980 478 MobiDBLite consensus disorder prediction 9 58 - -
Pte4g00980 478 MobiDBLite consensus disorder prediction 59 97 - -
Pte4g00980 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00980 Pte-Chr4 40948730 40953753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00980 110 435 Eukaryotic Initiation Factors Gene Family AT1G71770 26.702 6.90e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00980 K13161 - gmx:100790907 672.93