Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00972 ATGTTTGATCAGGAGGAATATTATGACTCTGTAATGGCATCTGAAGCAGAGGTTTACACTAGTACGAATTCGAATTCCTCCCAAAGCTTGAGAAATAAGAAGTGTAAAATCAACACGAGGAGGTTCAGTGATGAACAGATCCAATCTCTGGAATCCATATTTGAGACTGAGTCAAGGCTTGAGCCCAGAAAGAAGTTGCAGTTAGCAAGGGAGCTGGGGTTACAGCCACGGCAGGTTGCAATATGGTTTCAAAACAAGAGAGCTAGATGGAAGTCAAAGATGATGGAAAGAGACTACAATACACTGCTAGCTAATTACAACAGTCTCGCTGCTCGTTACGAAGCTCTGAAGAAAGAGAAGCAGGCATGGGTCATAAAGCTGCATAAGCTGAACGAGTTAATGCAGAAGCCACAAGAGGATAGTCAGAGTTGTGAGCAAATCAAAGCTGCAAACAGCATGGATAGTCATGAGTCATACAATGGAGACACCATGAAATGTGAAGTTGAGGAGGCGAAGCCAAGTATGTCAGAGCAAGGACAACTGCTACTACCGTCTGATTGTAACAGTAGCATAAAGACAGAATACTTTGCTTTGGAAGATGAATCTGACCTTCTAAATTGGATGGAGCCAGCGGAAGGTTCACTGACATCACAAGAGGATCGGGATAAGTTTGATCAGTCCAATGGTCTCTTGAACGAATCCGCTGGTGTCTGTCCTTGGTGGGATTTCTGGTCTTGA 738 0.4377 MFDQEEYYDSVMASEAEVYTSTNSNSSQSLRNKKCKINTRRFSDEQIQSLESIFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKMMERDYNTLLANYNSLAARYEALKKEKQAWVIKLHKLNELMQKPQEDSQSCEQIKAANSMDSHESYNGDTMKCEVEEAKPSMSEQGQLLLPSDCNSSIKTEYFALEDESDLLNWMEPAEGSLTSQEDRDKFDQSNGLLNESAGVCPWWDFWS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00972 245 Pfam Homeobox associated leucine zipper 93 135 IPR003106 GO:0006355|GO:0043565
Pte4g00972 245 CDD homeodomain 36 94 IPR001356 GO:0003677
Pte4g00972 245 ProSiteProfiles 'Homeobox' domain profile. 33 93 IPR001356 GO:0003677
Pte4g00972 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 167 IPR045224 GO:0003700
Pte4g00972 245 Pfam Homeodomain 40 91 IPR001356 GO:0003677
Pte4g00972 245 Coils Coil 99 133 - -
Pte4g00972 245 SMART HOX_1 36 97 IPR001356 GO:0003677
Pte4g00972 245 SUPERFAMILY Homeodomain-like 19 92 IPR009057 -
Pte4g00972 245 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981|GO:0006355
Pte4g00972 245 PRINTS Lambda-repressor HTH signature 73 89 IPR000047 GO:0003677
Pte4g00972 245 PRINTS Lambda-repressor HTH signature 64 73 IPR000047 GO:0003677
Pte4g00972 245 FunFam Homeobox-leucine zipper protein ATHB-7 20 93 - -
Pte4g00972 245 Gene3D - 27 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00972 Pte-Chr4 40852593 40853684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00972 41 246 Homeobox Transcription Factor Family AT3G61890 51.429 1.62e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte4g00972 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00972 K09338 - qsa:O6P43_027419 276.559