Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00955 ATGGCATACCACCAGCAGACAGGTTTAGATGGTGGCTATCTGTACAATGAGCTATGGAAAGCATGTGCAGGACCTCTGATCGATGTACCCGAGAAGCACCGGAAAGTTTACTACTTTCCTCAGGGTCACATGGAACAAGTTCAGTCTTCTCACTTTCTTTACCCCCATGCAGACTCTCTCTCTCATTTTTCTCCCGATAATATTCGTTTTTGTGTCCTCTCTTTGCTTAGAGAAAACAAAGGTTTTTGTTTCTGGGTTTTGCAGGTAGAAGCTTCGACTGATCAAAGACCTAATCAGCCAATGTCAAATTTCAGCCTTCCTTCGAAGATTCTTTGTCAAGTCGTCAACATTGAGTTTAAGGCTGAACCAGAAACCGATGAACTCTATGCTCAAATAACCTTAATTCCAGAACCAAATCAAGAAGAACCTGCAACTCCTGATCCCAGTCCACCTGAGCCTGCACATCGATTGGTCCGTTCATTCTGCAAAACACTCACTGCTTCTGATACTAGCACACATGGTGGGTTTTCAGTTCTTAGGAAGCATGCTACCGAATGTCTACCTGAGTTGGATATGACTCAAGAAACCCCAACTCAGGAGTTGATAGCAAGGGATCTTCATGGATATGAATGGAGGTTCAAGCATATCTTCAGAGGTCAACCGCGAAGGCACCTGCTGACAACAGGCTGGAGTACTTTTGTAACATCAAAGAGATTGGTTGCAGGGGATGCTTTTGTGTTTTTGAGAGGGGATAATGGGGAACTGCGAGTTGGAGTACGGAGACTTTCTCGCCAAATGAGTCATATGCCTCCATCTGTCATATCAAGCCAGAGCATGCACTTTGGAGTACTTGCCACTGCTCTCCATGCTTTGAATACCAAAACTATGTTTCTGGTTTATTACAGGCCAAGGGCGACTCCGTTCATAATTGGTTTGAACAAATATCTTGAAGGTGTTAATAATAAGTTTACAGTTGGCATGCGTTTCAAGATGAAATTTGAGGGAGAAGATGCTCCTGAGAGAAGGTTCTCTGGTACTATAATTGGGGTTGAGGATATATCTCCACAATGGCCAAACTCTATGTGGCGGTCTCTCAAGGTTCAATGGGATGAACCAGCAACAGTTCCAAGGCCAGAGAGGGTCTCTCCTTGGGAGATTCAACCTTATACAACTCTGCCTATCATCCCTCTTGCTCAACCAGGGGTCAGGAGCAAAAGATCCCGCCCTGCTGATTTGTCATCTGACAATGCTTCCACACTAACGGCTTCAGCTGGCTGGTATCATCATGGGTTACCTAATTCTCATGAACGTATGCAATTACATGAATCTGCCGAAGTCCATAGCAGAGAAAGCCCAGTAATGTGGCCTGCACCGAAAGAAACTTGTAGCATAGTTAGTAGGGGTAGCTGCTCTAGTACCTCAAACTTAGTAAGGTCAAGCATCTGGCCTTCTCCACATGCTGGTGACTCTATACGCATAATGCAGGAGAGAACAAATATCAATAATGCTGTGGGATTGCCATCAGTATCTGCAAATCCCGCTGGTGTTTCACTTGTGCCAAGTTATGATGAGTGGGGGAGAAAATTTGAGAGCTCTGCAGGTTGCTGGTTATTTGGAATTGATTTGTCAAATGACAACAATCCTTCTGCACCTTCCGAGAAGGGTGTATCATATTCCACAAAGTCGTCCAGCGGTGTCAGTGTTGGTCCTGCTCCTGCTTCTCTTGATGTGAATGCAGTGCCCTCAAAAGAGCAAAGGGATTCTGTATCTGATGCATCGCCAAGTGAAATGAAGAGCAATCATGCCTTAGTGGTTTCGCCCAGGACTCGCATCAAGGTGAAAATGCAAGGAATTTCTGTTGGTAGAGCAGTGGACTTGACAATGTTAAATGGTTATGATGATCTCCTTGACGAGCTAGAGAAACTGTTTGACATAAAAGGAGATCTCCATCAACCAAGCAAATGGGCTATCACATTTACAGATGATGAAAATGACATGATGCTCATGGGTGATGACCCTTGGCTGGAGTTCTGCAAGATGGTGAAGAGGATTTTCATCAAGTCAATTGATGAGGTCACAAAGATCAAAGCTAGAGGCAATCCTCCCTCATCTTCCTTGGAGAGTGCAGGAACCCTTGCCAGTCATCAGGCTTAG 2154 0.448 MAYHQQTGLDGGYLYNELWKACAGPLIDVPEKHRKVYYFPQGHMEQVQSSHFLYPHADSLSHFSPDNIRFCVLSLLRENKGFCFWVLQVEASTDQRPNQPMSNFSLPSKILCQVVNIEFKAEPETDELYAQITLIPEPNQEEPATPDPSPPEPAHRLVRSFCKTLTASDTSTHGGFSVLRKHATECLPELDMTQETPTQELIARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRLSRQMSHMPPSVISSQSMHFGVLATALHALNTKTMFLVYYRPRATPFIIGLNKYLEGVNNKFTVGMRFKMKFEGEDAPERRFSGTIIGVEDISPQWPNSMWRSLKVQWDEPATVPRPERVSPWEIQPYTTLPIIPLAQPGVRSKRSRPADLSSDNASTLTASAGWYHHGLPNSHERMQLHESAEVHSRESPVMWPAPKETCSIVSRGSCSSTSNLVRSSIWPSPHAGDSIRIMQERTNINNAVGLPSVSANPAGVSLVPSYDEWGRKFESSAGCWLFGIDLSNDNNPSAPSEKGVSYSTKSSSGVSVGPAPASLDVNAVPSKEQRDSVSDASPSEMKSNHALVVSPRTRIKVKMQGISVGRAVDLTMLNGYDDLLDELEKLFDIKGDLHQPSKWAITFTDDENDMMLMGDDPWLEFCKMVKRIFIKSIDEVTKIKARGNPPSSSLESAGTLASHQA* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00955 717 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 695 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte4g00955 717 CDD B3_DNA 159 261 IPR003340 GO:0003677
Pte4g00955 717 Gene3D - 158 262 IPR015300 -
Pte4g00955 717 ProSiteProfiles B3 DNA-binding domain profile. 161 263 IPR003340 GO:0003677
Pte4g00955 717 Pfam B3 DNA binding domain 161 261 IPR003340 GO:0003677
Pte4g00955 717 MobiDBLite consensus disorder prediction 548 569 - -
Pte4g00955 717 MobiDBLite consensus disorder prediction 698 717 - -
Pte4g00955 717 Gene3D - 605 696 - -
Pte4g00955 717 Gene3D - 322 393 - -
Pte4g00955 717 MobiDBLite consensus disorder prediction 548 600 - -
Pte4g00955 717 Pfam Auxin response factor 287 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte4g00955 717 ProSiteProfiles PB1 domain profile. 608 689 IPR000270 GO:0005515
Pte4g00955 717 MobiDBLite consensus disorder prediction 697 717 - -
Pte4g00955 717 SUPERFAMILY DNA-binding pseudobarrel domain 158 290 IPR015300 -
Pte4g00955 717 SUPERFAMILY CAD & PB1 domains 599 686 - -
Pte4g00955 717 SMART B3_2 161 263 IPR003340 GO:0003677
Pte4g00955 717 Pfam AUX/IAA family 586 644 IPR033389 -
Pte4g00955 717 Pfam AUX/IAA family 648 686 IPR033389 -
Pte4g00955 717 FunFam Auxin response factor 159 263 - -
Pte4g00955 717 FunFam Auxin response factor 322 393 - -
Pte4g00955 717 MobiDBLite consensus disorder prediction 581 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00955 Pte-Chr4 40664571 40669978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00955 11 695 B3 DNA Binding Superfamily AT4G23980 50.581 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte4g00955 AUX_IAA 8.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00955 K14486 - tcc:18613961 752.666