Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00954 ATGAAGATTGAGGTGGGTTTCAGAGGTGGGTTATGGAGTGATGAAGATAAGGCTATTGTTGCTGCGGTTTTGGGGCCTCGAGCTTTTGATTACTTGGTAACATGCTCGGTATTTAACGAGAATTTGTTAATGACCGTGGGGAGTGATGAGAATTTGCAGAACAAGCTCTCTGATTTTGTAGAGCGTCCTGACATGTCAAATTTTAGCTGGAACTATGCGATCCTGTGGCAAATTTCGAGGTCAAAAGCAGGGGATTGGGTTTTAGGATGGGGAGATGGGTCTTGCAGAGAACCAAGGGAGGGAGAGGTAACTCAAGGTTGTGGTTTTGTTAATCTTCGTTTTGATGATGAGACTCAGCAGAATATGAGGAAAAGGGTGCTGCAGAAGCTGCACAAGTTATTTGGTGATTCCGAGGAGGATAGCTTTGCCTATGGATTAGACCGTGTGACTGATACTGAAATGTTCTTTCTGGCCTCTATGTACTTCTCATTCCCTAGAGGAGAAGGTGGTCCGGGAAAGTGCCTCGCTTCTAGTAAGCACATGTGGCTGTGTGATGTGCTGAAATCTGGTTCAGATTACTGTGTTAGATCGTTCTTGGCGAAAGCTGCTGGCTTTCAGACTATTGTTTTAGTCCCAACTGATTTAGGAGTAGTAGAATTGGGTTCCGTTAGGCATGTGAGTGAGAGCTTGGAGTTGTTGCAGATAATAAAGATGGCGTTTTCTACAAACCCATCAATCAACAAAGCTAGGCCATTGTCTCCGTTGCCTGTAGTTAATGAGAAAAAAGAGGAAAGTGTTCTTTCTGCACATTTGGCTGTCGGAGATAAAGGAGTTCCAAAAAACTTTGGCCAGAACACGGGGAACTTAGGTCGGCCTTATTTTAGAGAGAAGCTTGCTGTTAGGAAGATGGAAGAGAAGCCTTGGGAGGGCTACCCTAATGGAAGTAGAATTCCCTTTCCAAGCTCTAGAAATGGTGGCGCGCATGTTTCAAGTTGGTCGTCCATTCCTGGTGTGAAACAAGCTAGTCATGTTGAAATTTATGGTTCTCAATTTTCGGCAAATGATGTGCAAGAGCAAGTAAATGGGGTTAGGCTTAATAGTTATCATCCACAAAAGCAGGTTCCAATGCAGATGGATTTTTCAGGAGCCACTTCAAGGCCATCTGTGGTAATGAAGCCTGTTATTGTTGAATCAGAGCATTCAGATATTGAAGCTTCCTGCAAAGACGAACACCGCTGTCTAACTGATGACAGAAGGCCTCGTAAACGGGGAAGAAAGCCTGCGAATGGGAGAGATGAGCCCCTGAATCATGTGGAAGCAGAGCGGCAGCGCCGGGAGAAACTGAACCAGAGGTTCTACGCACTAAGAGCTGTTGTTCCAAATATTTCCAAGATGGATAAGGCTTCCTTATTGGGAGATGCCATTGCATATATTAATGAGCTCCAGGCAAAGCTCAGGATTATGGAAGCTGAGAGGGAGAAGTTTGGAAGCACCTCGAGAGACGCAGTTGCTTTGGCTGCTATGGCGAAAGCAGAGCAACAAAGCAAATTTCCAGATGTAGATGTCGAAGTCTTCCAAGATGAGGTGGTCGTGCGGGTGAGCTGCCCTTTGGCTTCACACCCTGTTTCAAAAGTAATACAAGGATTCAAAGAGGCACAGATCACAGTCGTGGATTCAAAACTTTCTACTGCGAACGATACAGTATTCCATACATTTGTGATCAAATCACAAGGATCTGAACAGTTGACGAAAGAAAAACTGCTAGCAGCTTTTTCACAGGAATCCTCCTCCTCCCTACAGCCACCATCATCAACTGATTAG 1821 0.4498 MKIEVGFRGGLWSDEDKAIVAAVLGPRAFDYLVTCSVFNENLLMTVGSDENLQNKLSDFVERPDMSNFSWNYAILWQISRSKAGDWVLGWGDGSCREPREGEVTQGCGFVNLRFDDETQQNMRKRVLQKLHKLFGDSEEDSFAYGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASSKHMWLCDVLKSGSDYCVRSFLAKAAGFQTIVLVPTDLGVVELGSVRHVSESLELLQIIKMAFSTNPSINKARPLSPLPVVNEKKEESVLSAHLAVGDKGVPKNFGQNTGNLGRPYFREKLAVRKMEEKPWEGYPNGSRIPFPSSRNGGAHVSSWSSIPGVKQASHVEIYGSQFSANDVQEQVNGVRLNSYHPQKQVPMQMDFSGATSRPSVVMKPVIVESEHSDIEASCKDEHRCLTDDRRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLRIMEAEREKFGSTSRDAVALAAMAKAEQQSKFPDVDVEVFQDEVVVRVSCPLASHPVSKVIQGFKEAQITVVDSKLSTANDTVFHTFVIKSQGSEQLTKEKLLAAFSQESSSSLQPPSSTD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00954 606 MobiDBLite consensus disorder prediction 416 443 - -
Pte4g00954 606 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 431 495 IPR036638 GO:0046983
Pte4g00954 606 PANTHER MYC 40 590 IPR045084 GO:0003700|GO:0006355
Pte4g00954 606 FunFam Transcription factor bHLH13 425 499 - -
Pte4g00954 606 Coils Coil 478 498 - -
Pte4g00954 606 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Pte4g00954 606 Pfam Helix-loop-helix DNA-binding domain 436 482 IPR011598 GO:0046983
Pte4g00954 606 Gene3D - 426 497 IPR036638 GO:0046983
Pte4g00954 606 CDD bHLH_AtAIB_like 429 494 - -
Pte4g00954 606 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 432 481 IPR011598 GO:0046983
Pte4g00954 606 SMART finulus 438 487 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00954 Pte-Chr4 40644497 40647672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00954 11 605 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.530 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte4g00954 bHLH-MYC_N 1.9e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00954 - - qsu:111989355 830.476