Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00950 ATGGAGCAAGGTGGAATGGAAGGTATCCCATGTTTGGATGTAAAGGAAGAGGAAAACCATGATTCTCCAACTCTCACCAAAATTCATAATAATGGTCCCAGCAACATTAGTGTCCACGAGCTGCTAGAATGCCCTGTTTGTACAAATTCTATGTACCCTCCGATTCATCAGTGTCGCAATGGGCATACCCTTTGTTCAACCTGTAAAACAAGAGTACAAAATCGATGTCCAACTTGCAGACAGGAACTTGGTGACATAAGATGTCTAGCATTGGAAAAGGTAGCAGAGGCACTTGATATGCCTTGCAAATACTGCTCCCTTGGGTGTCCGGAGATATTTCCCTATTACAGTAAACTCAAACACGAGACTGTTTGTAAATTTAGACCGTATATCTGTCCATATGCTGGCTCTGAGTGCTCTATTATTGGCAATATTCCTTCTCTTGTTGGTCATTTAAGAGATGATCACAAGGTTGATATGCATTCGGGATGCACTTTCAATCATCGGTATGTCAAATCAAATCCACTTGAAGTAGAAAATGCTACTTGGATGTTAACGGTCTTCAACTGTTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCCTTTCAGCTTGGTGGGGCTCCTGTTTATATGGCATTCCTTCGGTTTATGGGCGATGAGAAAGAATCCCAAAACTACAGATACAGCCTTGAAGTTGGAGGAAATGGTCGTAAACTCACTTGGGAGGGTATTCCCCGTAGCATAAGGGATAGTCATAAGAAAGTTAGAGATAGCCATGATGGCCTTATTGTGCAGCGTAACATGGCACTTTTCTTCTCAGGTGGGGATAGGAAAGAGTTAAAGCTACGAGTTACAGGAAGGATATGGAAAGAGCAACAGAACCCTGAAGGTCTAAGCAACATTGACAGGTCCTGA 915 0.4251 MEQGGMEGIPCLDVKEEENHDSPTLTKIHNNGPSNISVHELLECPVCTNSMYPPIHQCRNGHTLCSTCKTRVQNRCPTCRQELGDIRCLALEKVAEALDMPCKYCSLGCPEIFPYYSKLKHETVCKFRPYICPYAGSECSIIGNIPSLVGHLRDDHKVDMHSGCTFNHRYVKSNPLEVENATWMLTVFNCFGQYFCLHFEAFQLGGAPVYMAFLRFMGDEKESQNYRYSLEVGGNGRKLTWEGIPRSIRDSHKKVRDSHDGLIVQRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGLSNIDRS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00950 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 153 285 - -
Pte4g00950 304 FunFam E3 ubiquitin-protein ligase SINAT3 94 152 - -
Pte4g00950 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 285 IPR008974 GO:0005515
Pte4g00950 304 SUPERFAMILY TRAF domain-like 98 289 - -
Pte4g00950 304 ProSiteProfiles Zinc finger SIAH-type profile. 97 157 IPR013010 GO:0008270
Pte4g00950 304 Pfam Seven in absentia protein family 86 285 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pte4g00950 304 SUPERFAMILY RING/U-box 39 84 - -
Pte4g00950 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 152 IPR013083 -
Pte4g00950 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 86 IPR013083 -
Pte4g00950 304 ProSiteProfiles Zinc finger RING-type profile. 44 80 IPR001841 -
Pte4g00950 304 CDD RING-HC_SIAHs 42 80 - -
Pte4g00950 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 28 291 - -
Pte4g00950 304 CDD Sina 158 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00950 Pte-Chr4 40619555 40623469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00950 22 292 C3H Transcription Factor Family AT2G41980 76.384 1.05e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00950 K04506 - cave:132188378 537.339