Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00947 ATGATAATTAAGCGGACGTTGAAACTTGAAATGCCGAATTTGAAGCGATGTAAGCTTGAAGAGCTTGATGAAGAAGGTGAGAATTCAATTTACGGTGCGTTTCAGAAGAAAAGGAGGGTCAATGGGTTGTACTCTCTTGGTATGCCTGGCGAAGAAGAAGACTTTGGATCATGGTGTTGTGAAGAAGAACCGTGTAGGGATTCTAAGGTTGATTCAAACTCTAAGTTGAATTTGAATTCCCATTCAAATTCTAAGCATCTGAAGAATAATAGTATCGAAGTAGCTTCGGCATTGCCCCGAAGCTCACAAGAGTCTGGAGTTCGGCCACCATTGTTAAAGTCGTCACGAGGTCGCGTACAGATGCTTCCTTCGAAGTTTAATGACTCTGTTTTGGATACATGGCAGACCGAAGAACCCAAATTTGATGATACAAACTTTAGCTTAGAATATGATTATGGTTTTGTAGAAGATAAGAGGAGAGATACAAAGCAGGCAGATGAAAACAATTTTAGGATTAAAAATGCACCTAGTTACTTACATCCCAAAATTAAGGAAGAACAAATAGATGACGACTTCGGTTGTTCAGGTTCTAATAAGTTTGGTTACCATAACCACAAGCATACGAATGTGAATAGTTCGTTTTCTGCGTCAACTAATGCCCACTCTTCCTCGTTGATAAAAAGTGACGGTTATACATTTGACTTTAATTTTGACGACAAGGAGAAACTGGTTAACGGTAATGCTGAAAAGAGGAAGGAGATTTACAAGCCGGGAGATTTTGCTTTGGGTGACGTTGTTTGGGCAAAGTGTGGCAAGAAATACCCACCTTGGCCTGCTGTGGTGATTGACCCTCTTCTGCAAGCTCCCAAATCTGTGCTCGATTGTTGTGTTCCTGATTCACTTTGTGTTATGTTTTTTGGGTTTTCCAAAAACGGCACGCAAAGGGACTATGCGTGGATGAAGCAAGGAATGATACACCCCTTCGCAAAATTCTTGGACAGATTCCGCGAGCTGCCTCCGGCGTACAAAAGTAATGCAAGTGATTTCCAAAAGGCTCTGGAGGAGGCATTGTTAGCTGAAGATGGTTTACTTGATGCTCACCAAAGTAATGGACAGTCATCTGATGCTGAAGTTTGTGGGTTTACAGAGGCTACCATCTCATTTATTGAACAGGAATGTTACTCTCGTAACCAGGAATCTTACTCGAAAGATGTACGACCTTGTGGTGGCTGTGGTTTGATTTTTCCTTCGAAGAACTTAAAGAGATCGAAGGATTCAAGTGGAGTGGGCAGGCTGTTATGTAAACATTGTGATAAGTTGTTAAAGTCAAAACAATATTGTGGAATTTGTAAGAAAATTTGGCATCATTCAGATGGTGGAAATTGGGTATGCTGCGATGGTTGCAACGTCTGGGTGCATGCTGAGTGTGACAAGATATCTGGAGAACTTTTCAAGGATCTGGAGCATGCTAGTTACTTCTGCCCGGATTGCAAAGCAAAATCTACGAACAAACCCATTTCACTAGCATGCCAATCCAAAGTCAATTCTATCAAGAGTTGTCACGATCCTGTCTCCCCGGAAAAGTTAAGAGTGGTGTGCAATGGCATGGATGGAATATACATCCCAAAATTTCATTCAATCATTTGTATGTGTGGTTGTGGATCAAGGAAGCAGACACCTAGTGAATGGGAAAAACATACCGGCAGCAGAGCCAAAAAATGGAAGTATAGTGTTAAAGTGAAAAGTACAATGCTGCCGCTCGAAAAATGGCTTGCAGAACATGATATACAAGGTGCAGAACCTTCAAGCCTAGATCAACAGCAGGTGCTTTCATTCCTGGAAGCAAAATATGAGCCTATCTTTGCAAAATGGACATCTGAAAGATGTGCAGTTTGTCGATGGGTTGAAGATTGGGAAGACAATAAGATTATCATCTGCAACAGATGCCAAATAGCTGTCCACCAAGAATGCTATGGAGCAAATACTGTTGAAGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTGGAAAGGGAATGCTGTCTTTGCCCTGTAAAAGGTGGTGCTCTGAAGCCAACGGACGTGGACATGCTTTGGGTTCATATCACATGTGCGTGGTTTAGGCCTGAAGTTAGTTTTTTGGATCATGCCATAATGCAACCTGCTTGTGGAATTCTTAAACTTTCTCCAAATTCCTTCAAAAAGACTTGCATTATCTGTAAGCAAATTCATGGTTCCTGCACTTCATGTTGCAAGTGTGCCACATATTTTCATGTGATGTGTGCATATAGAGCTGGGTATATCATGGAATTCCACTGTTCGGAAAAGAATGGGAAGGAGATCACGGAGAAGTTAATATATTGTGCTGTTCACAGGGTCCCAAATCCAGATTCTGTTGTGGTTTTACATAGTGCTCTGGGAGTATTTTCTGCCCGGAGTCTGCTACAAAATCATAAGAGATCCTTCAGGGGTACACGGTTGGTCTCAAGAAATATGATAGAACTTCCAGATTCATCAAATGCAGAAGCCGACGAATTTGATCCTCTTTCATCTGCCAGATGCCGAGTTCACAAAAGGTCAATAAAAAAGAGATCTGATGTGCCAATAATTCACTTGCTGAGGGGACCATCCCACCATTCTCTAGAAGCCATCACTAGCTTGAGTTCGCACAAAGACAATGAAGATCCCAAGATTTTTACTTCCTTGAAGAAAAGGCTTAATGATCTACAGAAAACTGAAAGGCATAGAATTTGCTTTGGAAAATCTGGTATACATGGATGGGGCCTCTTTGCACGAAAGGATATTCAAGAAGGAGACATGGTTGCTGAGTATCGTGGCGAGCAGGTTAGACGCAGTGTTGCAGATATGAGGGAAGCAAAGTATAGGGCAGAAGGGAAAGACTGTTACCTATTCAAGATCAGTGAGGAAGTTGTTATTGATGCCACAAACAAGGGCAATATAGCTCGCTTAATTAACCACTCATGCATGCCTAATTGCTATGCGAGGATTTTAAGTTTGGGGAAAGACGAAAGCCGGATAGTTCTCATAGCCAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTACGATTATTTGTTTGATCCAGATGAACAAGAGGAGTTGAAAGTACTTTGCCTTTGTAAAGCTCCCAATTGTAGAAAATACATGAATTAG 3183 0.4147 MIIKRTLKLEMPNLKRCKLEELDEEGENSIYGAFQKKRRVNGLYSLGMPGEEEDFGSWCCEEEPCRDSKVDSNSKLNLNSHSNSKHLKNNSIEVASALPRSSQESGVRPPLLKSSRGRVQMLPSKFNDSVLDTWQTEEPKFDDTNFSLEYDYGFVEDKRRDTKQADENNFRIKNAPSYLHPKIKEEQIDDDFGCSGSNKFGYHNHKHTNVNSSFSASTNAHSSSLIKSDGYTFDFNFDDKEKLVNGNAEKRKEIYKPGDFALGDVVWAKCGKKYPPWPAVVIDPLLQAPKSVLDCCVPDSLCVMFFGFSKNGTQRDYAWMKQGMIHPFAKFLDRFRELPPAYKSNASDFQKALEEALLAEDGLLDAHQSNGQSSDAEVCGFTEATISFIEQECYSRNQESYSKDVRPCGGCGLIFPSKNLKRSKDSSGVGRLLCKHCDKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISGELFKDLEHASYFCPDCKAKSTNKPISLACQSKVNSIKSCHDPVSPEKLRVVCNGMDGIYIPKFHSIICMCGCGSRKQTPSEWEKHTGSRAKKWKYSVKVKSTMLPLEKWLAEHDIQGAEPSSLDQQQVLSFLEAKYEPIFAKWTSERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGANTVEDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVDMLWVHITCAWFRPEVSFLDHAIMQPACGILKLSPNSFKKTCIICKQIHGSCTSCCKCATYFHVMCAYRAGYIMEFHCSEKNGKEITEKLIYCAVHRVPNPDSVVVLHSALGVFSARSLLQNHKRSFRGTRLVSRNMIELPDSSNAEADEFDPLSSARCRVHKRSIKKRSDVPIIHLLRGPSHHSLEAITSLSSHKDNEDPKIFTSLKKRLNDLQKTERHRICFGKSGIHGWGLFARKDIQEGDMVAEYRGEQVRRSVADMREAKYRAEGKDCYLFKISEEVVIDATNKGNIARLINHSCMPNCYARILSLGKDESRIVLIAKTNVSAGEELTYDYLFDPDEQEELKVLCLCKAPNCRKYMN* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00947 1060 FunFam Histone-lysine N-methyltransferase 892 1060 - -
Pte4g00947 1060 Pfam PHD-finger 641 675 - -
Pte4g00947 1060 SUPERFAMILY FYVE/PHD zinc finger 627 691 IPR011011 -
Pte4g00947 1060 CDD PWWP_AtATX3-like 263 363 - -
Pte4g00947 1060 SMART PHD_3 446 498 IPR001965 -
Pte4g00947 1060 SMART PHD_3 628 675 IPR001965 -
Pte4g00947 1060 SMART PHD_3 739 795 IPR001965 -
Pte4g00947 1060 Gene3D - 522 603 IPR010919 -
Pte4g00947 1060 Pfam SET domain 929 1034 IPR001214 GO:0005515
Pte4g00947 1060 ProSiteProfiles Extended PHD (ePHD) domain profile. 680 795 IPR034732 -
Pte4g00947 1060 MobiDBLite consensus disorder prediction 71 88 - -
Pte4g00947 1060 ProSiteProfiles Zinc finger PHD-type profile. 444 500 IPR019787 -
Pte4g00947 1060 ProSiteProfiles Post-SET domain profile. 1044 1060 IPR003616 -
Pte4g00947 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 796 IPR013083 -
Pte4g00947 1060 ProSitePatterns Zinc finger PHD-type signature. 629 674 IPR019786 -
Pte4g00947 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 677 IPR013083 -
Pte4g00947 1060 ProSiteProfiles Zinc finger PHD-type profile. 626 677 IPR019787 -
Pte4g00947 1060 Pfam PWWP domain 263 358 IPR000313 -
Pte4g00947 1060 Pfam PHD-zinc-finger like domain 682 794 - -
Pte4g00947 1060 CDD SET_SETD1-like 907 1056 - -
Pte4g00947 1060 CDD PHD_TCF19_like 447 497 - -
Pte4g00947 1060 Gene3D - 249 366 - -
Pte4g00947 1060 SMART set_7 918 1041 IPR001214 GO:0005515
Pte4g00947 1060 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1060 IPR025780 -
Pte4g00947 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 501 IPR013083 -
Pte4g00947 1060 MobiDBLite consensus disorder prediction 68 88 - -
Pte4g00947 1060 Pfam PHD-finger 446 499 IPR019787 -
Pte4g00947 1060 ProSiteProfiles SET domain profile. 918 1035 IPR001214 GO:0005515
Pte4g00947 1060 SMART PWWP_4 260 329 IPR000313 -
Pte4g00947 1060 SUPERFAMILY FYVE/PHD zinc finger 441 505 IPR011011 -
Pte4g00947 1060 FunFam Histone-lysine N-methyltransferase 678 797 - -
Pte4g00947 1060 SUPERFAMILY SET domain 912 1057 IPR046341 -
Pte4g00947 1060 SUPERFAMILY Tudor/PWWP/MBT 253 375 - -
Pte4g00947 1060 ProSiteProfiles PWWP domain profile. 262 331 IPR000313 -
Pte4g00947 1060 PANTHER PHD FINGER PROTEINS 77 1037 - -
Pte4g00947 1060 CDD PHD_ATX3_4_5_like 628 674 IPR042011 -
Pte4g00947 1060 Gene3D SET domain 846 1060 IPR046341 -
Pte4g00947 1060 SMART PostSET_3 1044 1060 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00947 Pte-Chr4 40578247 40587550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00947 629 781 C2H2 Transcription Factor Family AT3G14740 36.875 2.88e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte4g00947 zf-HC5HC2H_2 1.2e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00947 - - qsa:O6P43_027371 1362.05