Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00946 ATGGAAGTCATCTGCAACAGCACCAACCCTAATGTCTACAATCTCTTTGTTAAGCTACTGGATGGGAAAACCCTAACCCTCAAATTCTCATCTCCAAATTTACGCGTCGATTCGATCAAGCACCGAGTTTTCGAGATCACAAGAATCCCTCTTCAACACCAGCGTCTTCTTACAGGCCTCCGGAACCTCAACGACGGTGATTCCGTTGTTTCATGTGGGGATCACATGTTCCCCACCGTGCATTTGCTTCTCCGACTCGTTGGCGGCAAGGGAGGGTTCGGATCGCTATTACGTGGTGCGGCCACTAAGGCTGGTCAGAAAAAGACGAATAATTTCGATGCGTGTAGGGATATGAGTGGGAGACGGTTGAGGCATGTGAATGCCGAGAAGAAGCTGGAGGAGTGGAAGGCGGAGGAACAGGAGAGGAAGTTGGAGAAGATGGCGGAGGAGTTTCTGAAGAAACAGGCCAAGAAAGGTAAGAAGGGTGTGGGCGATGGGGAAGCACAGAAGTACGTTGCTAAGTATCGCGAGATGTCGGAAAGGTGTACTGCGGAGGTTACTGAGTCGGTCAAGGAAGCTTTGATGGCTGCTGGTAATGGGAAAAGGAAAGCTGTTGAAACGGAAATGGGTAAAGCAGAGGCGAAGAAGGTGAAGATATGGATGGGAAAGAGGAAGCTAGGCGGAATTGATAGTGATAATGATGAAGATAGCAGTGACGATGAAGAGGGAAGTGAAAAATCTACTGTGTTGAGTAATGGGAATCAATCAGACTCAAGTAGGGAAGCAGAAGGAAGTTCAGGGTTAGTCATTGGTGAAAAAGAAGACACAGAACTGTCAGGTGGGAGATCATGTAACAGTGGATCTGAAGAAAGCCAGACTGTCGTTGAGGGAAAAGACCAATCTGATGATTCCCCGTGCAATGATTCTTCTAATGCTGAACCAGTGATTGAAGATGAAAAGATCTCTGAGCAAACTGCTTTACCATGTTTGGAGAGTGATGTTTCTGGCACTAATGTTAGAGAAACTGAGGAACAGTGTAATGGTAGAATTGTAGCAGGTGTTTCAGATATAGGAATAAGTCATATAAGTCCAAGTGCAAACTTGCAAGCTACTAGTCCATCATCTGAGTTGGATGCTGACTGTTTATGTCAGGAGAAGACTGATGTTCATGAACAGAAGCCTCTAGATCTCAAGGTTGTCAACTCAGCTTCAGAACTCGAGGCTCTCGGGATGGATAGGTTAAAGTCTGAATTGCAAACCCGTGGTCTAAAATGCGGAGGTACTTTGCAAGAACGAGGTGCCAGACTTTTCCTTCTAAAGACTACTCCGTTGAACAAGCTTCCGAAGAAACTGCTGGCTAAAAAATGA 1368 0.4605 MEVICNSTNPNVYNLFVKLLDGKTLTLKFSSPNLRVDSIKHRVFEITRIPLQHQRLLTGLRNLNDGDSVVSCGDHMFPTVHLLLRLVGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKKLEEWKAEEQERKLEKMAEEFLKKQAKKGKKGVGDGEAQKYVAKYREMSERCTAEVTESVKEALMAAGNGKRKAVETEMGKAEAKKVKIWMGKRKLGGIDSDNDEDSSDDEEGSEKSTVLSNGNQSDSSREAEGSSGLVIGEKEDTELSGGRSCNSGSEESQTVVEGKDQSDDSPCNDSSNAEPVIEDEKISEQTALPCLESDVSGTNVRETEEQCNGRIVAGVSDIGISHISPSANLQATSPSSELDADCLCQEKTDVHEQKPLDLKVVNSASELEALGMDRLKSELQTRGLKCGGTLQERGARLFLLKTTPLNKLPKKLLAKK* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00946 455 SUPERFAMILY Ubiquitin-like 8 90 IPR029071 -
Pte4g00946 455 PANTHER SPLICING FACTOR SF3A-RELATED 14 454 - -
Pte4g00946 455 ProSiteProfiles Ubiquitin domain profile. 13 89 IPR000626 GO:0005515
Pte4g00946 455 Pfam Replication stress response SDE2 C-terminal 386 454 IPR025086 -
Pte4g00946 455 MobiDBLite consensus disorder prediction 280 294 - -
Pte4g00946 455 Gene3D - 12 94 - -
Pte4g00946 455 Coils Coil 123 157 - -
Pte4g00946 455 MobiDBLite consensus disorder prediction 247 263 - -
Pte4g00946 455 MobiDBLite consensus disorder prediction 222 324 - -
Pte4g00946 455 Pfam Silencing defective 2 N-terminal ubiquitin domain 13 158 IPR024974 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00946 Pte-Chr4 40572158 40575064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00946 395 454 C2H2 Transcription Factor Family AT5G06160 48.333 1.07e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00946 K25059 - qsa:O6P43_027369 425.246