LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte4g00944	ATGAACCAAAAGGGGCAGAAATTTGTGAAGTTTGCTGAATGGCAGTCTGAAACATCTTCAACTTCAGAACAGCAAAGTTTACATATGGATGGATCCAATCAGAAAACAACAAGGCAAAGTTTAAGCTTCTTATTGAAGGATATCCAGGAAGGATTCGACAGTTTTTTTCAAAGGATTACAAAATTCAGAAAACCAACAAGGGTACATGCTGCAAATGATAAGTCATGTCCAGCAAATAAGTTGGTGTCAAGGAAGAAAGTTTTCGATCCGCAGGGTCCACTTCTTCGGAAATGGAACAAAATATTTGTAATCTCATGTGTGATAGCAGTGTCAGTAGATCCTTTGTTCTTCTACATACCAGTGATTGATTACAAGAAACATTGTCTTGATTTGGCTGGTACACTTAAAATCACAGCGTGTGTTCTGCGTACATTCTTTGATCTTTTCTTTGTGCTTCATATCATCTTTCAGTTCCGTACTGGGTTCATAGCCCCTTCTTCTAGAGTCTTTGGAAGGGGTGAACTGATTGATGAACCTCTGGTTGTAGCAAAAAGATACTTGTCCTCATACTTCATTGTAGACATTCTTTCAATCCTTCCACTTCCACAGGTGTTGCTTCTAGCTATCATCCCAAATCTCAAAGGATCGGTTCCATCTCCAACGAAGGATCTGTTAGAATGCACAATCTTCATTCAATATGTGCCAAGGCTCATTAGGATTATTCCATTATCCAAAGAAGTAGTGAGAACTTCAGGCATACTCACGGAAACAGCTTGGGCTGGAGCTGTTTTTAATCTGTTTCTCTACATGCTAGCGAGTCATGTTGCAGGAGCAATGTGGTACTTGTTTTCAGTAGAGTCAGAGCTTAGGTGCTGGAGAAGAGCGTTACACAATGCATCTCTTCACAATATCGGGTCAATGAATTGTGGAATACAAAAATCAAATGTCATTCCGCTTCTTGCAAACTCATGTCCTTTCACTGATCCAGATGATATTAAAGATAATTCAGTCTTCAACTTTGGAATATATGTTGAGGCACTTAAGTCTGGTGTAACAAATTCAACCATGGACTTCCCTGACAAGTTCTTCTTCTCTTTCTGGTGGGGTCTGCGCAATCTGAGTTCTCTTGGCCAAAACCTCAAGACTAGCACTTACATTTGGGAGATAATCTTCGCTATCTTCATATCTATCTTTGGCTTGGTTTTGTTTGCATTGCTCATTGGGAATATGCAGAAATATCTGCAATCAACAACAGTGAGAGTAGAAGAAATGAGACTGAAGAGAAGGGATGCTGAGCAGTGGATGTCACACCGAATGCTTCCCGAGACGCTGAGAGAACGCATTAGACGATATGAGCATTACAAATGGCAAGAGAACAGAGGTGTTGAAGAGGAGTTTCTAATCCGAAACCTCCCAAAAGATCTCAGAAGAGACATAAAGCGCCATCTTTGTTTAGATCTGTTGATGAGAGTACCAGTGTTTGAGAAAATGGATGAGCAATTGTTGGATGCACTGTGTGATAGACTGAAGCCAGTTCTGTATACAGAAAAGAGTGTTATTTTACGTGAAGGGGAACCAGTTGATGAAATGCAGTTCATCATGCGAGGAAGCCTTGCTACCATGACTACTAATGGTGGCCGAACAGGCTTCTTCAACTCTGCTATGCTCAAAGCTGGTGATTTCTGTGGAGAAGAGCTTCTAACATGGGCTCTTGATCCCAACTCCTTCTCACATCTTCCTGCTTCAACCCGAACAGTAGAAGCTCTGTCAGAAGTTGAAGCCTTTGCACTCACTTCTCATGACTTAAAGTTTGTTGCTTCCCGGTTTCGCCGTCTTCATAGCAAACAACTCCAGCACACTTTCAAGTTCTACTCCTTGCAATGGAGGACTTGGGCAGCATGTTTTATACAAATAGCATGGCGTTGCTATTGTAAGAGAAAGCTTGATAAGTCATTGCGTGAAGCAGAAAACAGGCTACAAGATGCTTTAGCAAAAGGAGTGGGGACAACATCAATTGGTCTTGGTGCCACTGTATTTGCATCAAGGTTTGTTACCAATGCATTGCGGACCTTAAGACAGAACACTGCTCCGAACACAAGAGTGTCACCAAGATTGCTGCCGTTGCTGCCTCAGAAACCTACAGAGCCTGATTTCACAAAAGATGGATTTTCCAGTGTGTAA	2181	0.4163	MNQKGQKFVKFAEWQSETSSTSEQQSLHMDGSNQKTTRQSLSFLLKDIQEGFDSFFQRITKFRKPTRVHAANDKSCPANKLVSRKKVFDPQGPLLRKWNKIFVISCVIAVSVDPLFFYIPVIDYKKHCLDLAGTLKITACVLRTFFDLFFVLHIIFQFRTGFIAPSSRVFGRGELIDEPLVVAKRYLSSYFIVDILSILPLPQVLLLAIIPNLKGSVPSPTKDLLECTIFIQYVPRLIRIIPLSKEVVRTSGILTETAWAGAVFNLFLYMLASHVAGAMWYLFSVESELRCWRRALHNASLHNIGSMNCGIQKSNVIPLLANSCPFTDPDDIKDNSVFNFGIYVEALKSGVTNSTMDFPDKFFFSFWWGLRNLSSLGQNLKTSTYIWEIIFAIFISIFGLVLFALLIGNMQKYLQSTTVRVEEMRLKRRDAEQWMSHRMLPETLRERIRRYEHYKWQENRGVEEEFLIRNLPKDLRRDIKRHLCLDLLMRVPVFEKMDEQLLDALCDRLKPVLYTEKSVILREGEPVDEMQFIMRGSLATMTTNGGRTGFFNSAMLKAGDFCGEELLTWALDPNSFSHLPASTRTVEALSEVEAFALTSHDLKFVASRFRRLHSKQLQHTFKFYSLQWRTWAACFIQIAWRCYCKRKLDKSLREAENRLQDALAKGVGTTSIGLGATVFASRFVTNALRTLRQNTAPNTRVSPRLLPLLPQKPTEPDFTKDGFSSV*	727

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte4g00944	726	ProSiteProfiles	cAMP/cGMP binding motif profile.	493	623	IPR000595	-
	Pte4g00944	726	Pfam	Ion transport protein	98	421	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Pte4g00944	726	SUPERFAMILY	cAMP-binding domain-like	422	615	IPR018490	-
	Pte4g00944	726	SUPERFAMILY	Voltage-gated potassium channels	89	415	-	-
	Pte4g00944	726	Gene3D	-	101	417	-	-
	Pte4g00944	726	Coils	Coil	645	665	-	-
	Pte4g00944	726	FunFam	Cyclic nucleotide-gated ion channel 1	491	609	-	-
	Pte4g00944	726	MobiDBLite	consensus disorder prediction	14	33	-	-
	Pte4g00944	726	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	72	718	-	-
	Pte4g00944	726	Pfam	Cyclic nucleotide-binding domain	513	603	IPR000595	-
	Pte4g00944	726	FunFam	Cyclic nucleotide-gated ion channel 1	420	484	-	-
	Pte4g00944	726	Gene3D	Helix hairpin bin	420	484	-	-
	Pte4g00944	726	MobiDBLite	consensus disorder prediction	701	726	-	-
	Pte4g00944	726	CDD	CAP_ED	493	624	IPR000595	-
	Pte4g00944	726	Gene3D	Jelly Rolls	491	611	IPR014710	-
	Pte4g00944	726	SMART	cnmp_10	493	624	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte4g00944	Pte-Chr4	40556171	40560915	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte4g00944	1	721	Ion Channels	AT5G53130	62.397	0.0	904

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte4g00944	K05391		-	qsa:O6P43_017768	1005.74