Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00940 ATGATCGTAAAGTTCTTGTCGCAGCACCGTCTTTTGAACTCAAACCAATCCATGAGGCTCTCCATCCATTCGTCTCGGGCTATACGCGTTTTCTCTCGGATATTCCCTTTCCGTTTGAGGTACTTGAGTTCGGGTTCCCGACTTCAAGGAGTGTATGTACGCAAGCTTTCGTCCCGGTCAACCCGACCCGTTACCCGTCCGCGGTCTGGGTTCGCTGGAGATGGTCGTGATATAGGAAAGGTTCGAGCTTCCAAGAGTTTGATTGAGAATGAGTCTGAACTCAGTGACTGGGTTAGTGACTTGAAGACGATTTCGTGTCGTGATCGACTCACTAGTGACGTGGATGAGCCTGAAGATAGAGGGCGTAGTAGATTCAAGGAAAAAGGATCCTTTTCAGTGAAGAGGCAGAGAGAGAGTGACGGGGCCGACTTTAGCGAGTCAACCAGGAGGAGAACTCGGAACTCTAGCGAGCCTTACAATATAAATTCACCTATTAGTAGGGTATTTGACCATGGATTTGGTGATGATAAAGAGGAGGAAGATAACGGGCTTCAGTCAAAGAGAGGAAGTGGAGAGTTCGAAGGAAGGGAAGTGAATTCTGAGTTTGGGAGTAGAGCTGCTGAGCGATTAAAGAGAAGTGGGAAGGATTTAAGGAAGAGATCACCTTTGATGATGGAGGATGATTTTGATTTGGAAGATGACAAGGGAGAAGAATTCGTGGGTGGTATAGGGAATTTGCTTGAGGAAGAAGATAGTGGTAGTGATGGTGATGGATATGATGATGGTGCTGACGAGGTACTGAGGAAGGGTAGAAGCTCCTTGCTTGGATCAGATAAGGTATTGAATGAGAGGACTGTGTCAAGAAGCTCACCTGGGAAGTCTAACTCATATTTAAGTGAGACGAGATTTGATCATTGTGCTGTGTCGTCTTTATCATTCAAAGGAATCAAGGATGCTGGTTATGTGAACATGACTGTGGTTCAGGAAGCAACTCTCCCCGTGATACTGAAAGGTAAGGACGTCCTTGCTAAGGCTAGAACAGGCACTGGAAAAACTGTAGCATTTTTGCTTCCTTCAATCGAAGTGGTAGTGAAATCACCTCCAATTGAACGTGATCAAAAGCGACCGCCGATTCTGGTACTTGTCATATGCCCAACTCGAGAGCTTGCAACTCAAGCTGCTGCAGAAGCTGATAAGCTGTTGAAGTATCATCCATCTATTGGGGCTCAAGTTGTGATAGGAGGAACAAAGATTGCTCTAGAGCAAAAATCCATGCAAGCAAATCCTTGTCAGATTCTTGTTGCTACACCTGGAAGGCTTAGAGATCATCTTGAGAATACTTCTGGTTTTGCGACTAGGCTGATGGGGGTGAAAGTCCTTGTGCTTGATGAAGCAGATCGTTTGTTGGACATGGGTTTCCGTAAAGACATTGAAAAGATAATCGCTTCCGTACCAAGACAAAGACAGACCCTACTTTTTTCTGCAACTGTTCCAGCAGAGGTTCGTCAAATATGTAATGTTGCTTTAAAGAGGGATCACGAATTTATTAATACAGTGGAAGAGGGCAGTGAGGAGACGCATTCAAAGGTTCGACAGATGCATGTAGTTGCTCCATTGGATAAGCAATTTCCCGTTCTCTATGCAATCCTGAAAGAACATATTGCAGGTGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACAGCCATGGTTACACGACTTGTCGCTGGCCTTCTTGGTGAATTGAACTTGAATGTCAGAGAGATCCATTCTAGAAAAGCCCAGACCTATAGAACCAGAGTTTCAGATGAATTCCGTAAGTCAAAAGGTCTTATATTGGTAACATCAGATGTATCTGCTCGTGGAGTTGATTATCCGGATGTCACCCTTGTTGTACAGGTGGGCTTACCAGCAGGTAGAGAGCAGTACATACATAGGCTTGGCAGGACTGGGCGGAGAGGTAAAGAAGGGCAAGGCATATTGTTACTAGCACCTTGGGAAGAATTCTTTTCATCTACCATCAAGGATTTGCCTATAACAAAAGCTCCTGTACCTACTGTTGACCCCGACACAAACAAAAAGGTGCAACGGGCACTGTCCCACGTGGAGATGAAGGACAAAGAATCTGCTTACCAATCCTGGCTTGGCTACTACAACTCCGACAAGACAGTGGGACGCGACAAGTACAGACTTGTGCAGCTTGCCAATGAGTTCAGTAGGAGTATGGGGCTTGATAATCCTCCAGCTCTTAAGAAGGTAGTCCTGGGAAAGATGGGCCTCAAACATATTCCCGGTTTGCGTTCAAAGTAA 2310 0.4537 MIVKFLSQHRLLNSNQSMRLSIHSSRAIRVFSRIFPFRLRYLSSGSRLQGVYVRKLSSRSTRPVTRPRSGFAGDGRDIGKVRASKSLIENESELSDWVSDLKTISCRDRLTSDVDEPEDRGRSRFKEKGSFSVKRQRESDGADFSESTRRRTRNSSEPYNINSPISRVFDHGFGDDKEEEDNGLQSKRGSGEFEGREVNSEFGSRAAERLKRSGKDLRKRSPLMMEDDFDLEDDKGEEFVGGIGNLLEEEDSGSDGDGYDDGADEVLRKGRSSLLGSDKVLNERTVSRSSPGKSNSYLSETRFDHCAVSSLSFKGIKDAGYVNMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPIERDQKRPPILVLVICPTRELATQAAAEADKLLKYHPSIGAQVVIGGTKIALEQKSMQANPCQILVATPGRLRDHLENTSGFATRLMGVKVLVLDEADRLLDMGFRKDIEKIIASVPRQRQTLLFSATVPAEVRQICNVALKRDHEFINTVEEGSEETHSKVRQMHVVAPLDKQFPVLYAILKEHIAGDVDYKVLVFCTTAMVTRLVAGLLGELNLNVREIHSRKAQTYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPAGREQYIHRLGRTGRRGKEGQGILLLAPWEEFFSSTIKDLPITKAPVPTVDPDTNKKVQRALSHVEMKDKESAYQSWLGYYNSDKTVGRDKYRLVQLANEFSRSMGLDNPPALKKVVLGKMGLKHIPGLRSK* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00940 769 Gene3D - 524 757 IPR027417 -
Pte4g00940 769 CDD SF2_C_DEAD 530 663 - -
Pte4g00940 769 MobiDBLite consensus disorder prediction 111 153 - -
Pte4g00940 769 CDD DEADc_MSS116 308 517 - -
Pte4g00940 769 Gene3D - 277 516 IPR027417 -
Pte4g00940 769 SMART ultradead3 320 533 IPR014001 -
Pte4g00940 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 549 695 IPR001650 -
Pte4g00940 769 PANTHER RNA HELICASE 288 699 - -
Pte4g00940 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 515 IPR014001 -
Pte4g00940 769 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 461 469 IPR000629 -
Pte4g00940 769 Pfam DEAD/DEAH box helicase 326 503 IPR011545 GO:0003676|GO:0005524
Pte4g00940 769 MobiDBLite consensus disorder prediction 170 213 - -
Pte4g00940 769 Pfam Helicase conserved C-terminal domain 549 654 IPR001650 -
Pte4g00940 769 SMART helicmild6 573 654 IPR001650 -
Pte4g00940 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 668 IPR027417 -
Pte4g00940 769 MobiDBLite consensus disorder prediction 111 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00940 Pte-Chr4 40499346 40503763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00940 301 682 Eukaryotic Initiation Factors Gene Family AT3G19760 28.900 4.81e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00940 - - qsa:O6P43_027365 973.77