Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00905 ATGTCCTCCACCACTTCTCACACCCCCACCCACACATACCTCACCAACCTTGGCCTTGGCTATGCTATAGCCATAGCTCTTGGCTTCCTTGTACTCCTCTCTACCCTCCTTCTTTCCTCGTACCTATGTTGTCGGGCTAGGAACCGTTCACGTACTCAAAACCCAACCCCAGATAATAACAACAGCGCTGAAGGGGTAGTTCTGCCACGGATCATCTTCGTTGCTGAAGATGATGACAACCAGCGGGATGAGGAAAATACTGTTGTGGGTCTCGAACAGAATGTGATTAACTCTTACCCCAAGTTTCCGTACAGTAAGGAGTCTGTGGGTACCAACAACACGATTTGTTCGATATGTTTGTGTGAGTACAAGGATTCGGAGATGTTAAGGATGATGCCGGAGTGTCGTCACTTTTTTCACCTCTGCTGTGTCGACGCTTGGTTAAAGCTTAATGGGTCTTGTCCCGTTTGCCGGAACTCTCCGCTTCCGACACCGTTGTCAACGCCGTTGTCGGAAGTCGTGCCGCTGTCTCAGTATGCAGCGGATCGAAGACGAAGGAGATGA 564 0.5 MSSTTSHTPTHTYLTNLGLGYAIAIALGFLVLLSTLLLSSYLCCRARNRSRTQNPTPDNNNSAEGVVLPRIIFVAEDDDNQRDEENTVVGLEQNVINSYPKFPYSKESVGTNNTICSICLCEYKDSEMLRMMPECRHFFHLCCVDAWLKLNGSCPVCRNSPLPTPLSTPLSEVVPLSQYAADRRRRR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00905 187 SMART ring_2 116 157 IPR001841 -
Pte4g00905 187 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Pte4g00905 187 PANTHER RING-H2 FINGER PROTEIN ATL67 5 186 IPR044289 GO:0016567|GO:0016740
Pte4g00905 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 162 IPR013083 -
Pte4g00905 187 Pfam Ring finger domain 115 158 IPR001841 -
Pte4g00905 187 SUPERFAMILY RING/U-box 95 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00905 Pte-Chr4 40121394 40122677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00905 13 178 C3H Transcription Factor Family AT5G06490 38.798 1.01e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00905 - - qsa:O6P43_027286 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00905 4 40121394 40122677 Pte4g00905 4 40121394 40122677 RCT