Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00901 ATGCTCATGGAAGTCGACTGGGATCTGCACGCTGTGGTCAGAGGCTGCACCACCATTAGTTCTGTCTCTTCCTCCTCCTCCCCCACCATCACTACACCAGCTGCCTCTTCTGTATCATCAAATTGTTTTGACTTGATCTATCGGCCTGCTGTCTCCCCTGGCTTCCCCACTACCTATGGTGTTGGACAAGCTTGCAAAATCTCGAGTTTACCAGATCCCTTTGAAGCAAGGAATAGTAATGAAGAATTGCATGAGCTATACAAGCCTTTCTTCCCTAAATCTCAGAGTTACACTTCACCATCATCAACCTTGTCTTATTTCTCCTACACCACTGCACCCAAAGTAGCTCAATCGCAACAAAAGCAACAGCAGCAGCCTAGTAAGCAGTCTGGTGTTGCCCATCGATCCAAAAGAAGAAAGAACCAACTCAAGAAAGTTTTTCAAGTACCAGCAGAGGCTCTGTCTTCAGATATATGGGCATGGAGGAAATATGGACAAAAGCCCATCAAGGGTTCGCCATATCCTAGGGGTTATTACAGATGTAGCAGCTCCAAAGGATGCTTAGCCCGCAAACAGGTGGAGCAAAACAGATCCGAGCCAGGAATGTACATAGTCACGTACACTGCTGAGCACAACCACCCGGCTCCTACGCACAGAAATTCACTTGCTGGTTCCACACGCCAAAAGCCCCTGACATCCGAAGCAGTGACTGCTAGTGACTCTGATGTTAAATTGCAGGCAAAACCAACTTCGCCAGTGACCCCCAAAGTAGAAGAGGAGGTTGTACCTCACAGTACAAGTTCAGAGAGCAAAGAAGAAAAGGAAGATGTGGTAGATGATGGGGAAGACGAATTTGGGATACGCCATATGGAGCTGACAGATGATTTCTTCACGGGTTTAGACGAATTTACAAGTTCAGCCACAACCAGTGACTGCTTTACCGAACACATTCCAGCCAATTTAAGCCTTCCTTCTTGGGTGACCAATTGTCCCGCCGTTGCCGCCGGAAGTGGTTGTTTGCCGGCAAAGGATCAGATGTCTTTGTGCCTGCCTTATCAAAGTTGA 1065 0.4761 MLMEVDWDLHAVVRGCTTISSVSSSSSPTITTPAASSVSSNCFDLIYRPAVSPGFPTTYGVGQACKISSLPDPFEARNSNEELHELYKPFFPKSQSYTSPSSTLSYFSYTTAPKVAQSQQKQQQQPSKQSGVAHRSKRRKNQLKKVFQVPAEALSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVEQNRSEPGMYIVTYTAEHNHPAPTHRNSLAGSTRQKPLTSEAVTASDSDVKLQAKPTSPVTPKVEEEVVPHSTSSESKEEKEDVVDDGEDEFGIRHMELTDDFFTGLDEFTSSATTSDCFTEHIPANLSLPSWVTNCPAVAAGSGCLPAKDQMSLCLPYQS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00901 354 SUPERFAMILY WRKY DNA-binding domain 153 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte4g00901 354 ProSiteProfiles WRKY domain profile. 150 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte4g00901 354 Gene3D WRKY domain 139 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte4g00901 354 MobiDBLite consensus disorder prediction 115 144 - -
Pte4g00901 354 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 306 IPR044810 GO:0003700
Pte4g00901 354 MobiDBLite consensus disorder prediction 212 280 - -
Pte4g00901 354 SMART WRKY_cls 155 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte4g00901 354 Pfam WRKY DNA -binding domain 157 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte4g00901 354 MobiDBLite consensus disorder prediction 213 248 - -
Pte4g00901 354 FunFam WRKY transcription factor 22 139 209 - -
Pte4g00901 354 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00901 Pte-Chr4 40107640 40109117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00901 3 336 WRKY Transcription Factor Family AT4G01250 46.377 2.03e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pte4g00901 WRKY 2.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00901 K13425 - qsa:O6P43_017681 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00901 4 40107640 40109117 Pte9g00392 9 4546779 4547791 RCT
Pte4g00901 4 40107640 40109117 Pte4g00901 4 40107640 40109117 RCT