Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00900 ATGGTGGATGGCGATAACTTCGCTAAAACCATTTGCTCAATTTGCTACGAAGATCTCAAGCCTATTGCCGAAGACATCCAATCAATCTTTAAATGTGGACATGTCTTTCACGAACTTTGTTTGCAGCAGTGGTTTGAGTACTGTTCCAGTGCAAAAAAGTGTACTTGTCCTGTTTGCAAGCAGCACTGTAAGGCAAGCGATGTGGGCCGGCTTTATTTTCAGTCTATCGGAGATGTAGCCGAGACGATAGTTCCCAGAAAATCAAATGATTCTTTGGAGGATGCGGAGGTTTTGCGCAGGGAAGTAAAGAAATTGGAGGTTAAAGTTTCAGGGCTTAGTTCGGCACTAGATTGTCAAGAAAAGCAGTGCAAAGAGCTCAGCGAGGAGCTTCGTGACTGCAATGAACGGGTAAAATTGGAAGCTAAACTGAAAAATGAAGCGTTGCAGCAGACAGCATCATTACAACAACTTTATCGTAGAAAATCTGAGGATCTTGATAAATCAACAGCAGAGTGCTTGAGGTTACAAGAGAAGAAGATGGCCTTGGCGAAAGAGGTTGCTGCATTCAAATTAGTATCGAATTTTGATCTTGATGAAGAGGAGGTTTTAAAGCTGGCAGCTTTGGGGAATGAGACAAGCCACAAAGATACAGTAGATGTCCTACGAAAATCTTTGGTATTGCGCAACAGGAATTACAAAGAATTAATGGCTAAGTGCAATCTCCTTGGAAGAGGAGAGGCTCGTTGCGCTAAAAAACTTGAAAAGGCTAAAGAGAAAATAACTAAACTGAAGGCGAGAATGCAAGAATTGGAGACTGCTGTTGAAGTAAAAGAGAATGAAGTTCTGAGGTCTATGAAAACTTCGAAGAAAAGTAGCTCGACTTCCATTGTGGAAAATAATATTCAGTTAGAAGATCAAGGAATTAACTTGTCAACACCAAAAGTTAGTCTCAGCGGTGCTGAGAAATTTGACAATGATTTATTTCGATCTAGGTTGACGGAAGAAAGCAATTTAGGTCCCGGAGACCGTGCACGACGTAGTAAGGAAGCGAAGAATATTGTGCCCTCTAATCAACAGAGAGATTATGGTAATTTTATAGAGGATGCTGCTGAAAGAGACAACCCAGCTTTTTCCATGAGACATGACTTTAAACAAGGAGACAAGGCAAAAGAACTGTTAAATTCAAAGGGAGCATCCGATGTAAACGGAGACAGAGTAACAGTACGCTTGGGTGACTCGGATGAACCTCTAAACAAAAGAACTAATATAGAAATAATACGATTGGGTGACTTTGATGAACCGCAAAACAAAAGAACTGTGATAGGAAGTGAAATGGAGATCACTAGTGCTAGTTGTTTGGAAGACGATGTGACAATACTTGATGATGTGCCACAAGTTCTATCCATGCCTAACATCAGAAAAGAGAAACCATCAATAAGTATCGCTAAACCAGGAGATATATGCTTTTCTGGCGGATTGGTTGGTCCTGATGGAACGAACCGGTACTTGGGTAACTGGTGCAAGCGTGGACATAATAAAAGCTTACCATCTGCACAAGGTGACCTGATTGCTGTTGGAGCTGATGGCAGAGGAGGTAGAATTAAAGTACTGAGATCTCCAAAACCATCTCCACCGGGTGGCAAGGAAAATTCCACAGCAGCAAAGAGGTTAAAGATTGGATCCAAAATTAATATGCAGTCTGGAGGATGCTTGCAGATAGAACACTTCTTTGGGAGAGTCAGTCAGTAA 1749 0.4151 MVDGDNFAKTICSICYEDLKPIAEDIQSIFKCGHVFHELCLQQWFEYCSSAKKCTCPVCKQHCKASDVGRLYFQSIGDVAETIVPRKSNDSLEDAEVLRREVKKLEVKVSGLSSALDCQEKQCKELSEELRDCNERVKLEAKLKNEALQQTASLQQLYRRKSEDLDKSTAECLRLQEKKMALAKEVAAFKLVSNFDLDEEEVLKLAALGNETSHKDTVDVLRKSLVLRNRNYKELMAKCNLLGRGEARCAKKLEKAKEKITKLKARMQELETAVEVKENEVLRSMKTSKKSSSTSIVENNIQLEDQGINLSTPKVSLSGAEKFDNDLFRSRLTEESNLGPGDRARRSKEAKNIVPSNQQRDYGNFIEDAAERDNPAFSMRHDFKQGDKAKELLNSKGASDVNGDRVTVRLGDSDEPLNKRTNIEIIRLGDFDEPQNKRTVIGSEMEITSASCLEDDVTILDDVPQVLSMPNIRKEKPSISIAKPGDICFSGGLVGPDGTNRYLGNWCKRGHNKSLPSAQGDLIAVGADGRGGRIKVLRSPKPSPPGGKENSTAAKRLKIGSKINMQSGGCLQIEHFFGRVSQ* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00900 582 MobiDBLite consensus disorder prediction 331 350 - -
Pte4g00900 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 104 IPR013083 -
Pte4g00900 582 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Pte4g00900 582 SMART ring_2 12 59 IPR001841 -
Pte4g00900 582 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 580 - -
Pte4g00900 582 Coils Coil 88 136 - -
Pte4g00900 582 MobiDBLite consensus disorder prediction 331 353 - -
Pte4g00900 582 Pfam Ring finger domain 11 60 IPR001841 -
Pte4g00900 582 Coils Coil 158 185 - -
Pte4g00900 582 SUPERFAMILY RING/U-box 10 64 - -
Pte4g00900 582 Coils Coil 246 280 - -
Pte4g00900 582 CDD RING-H2 12 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00900 Pte-Chr4 40097088 40101085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00900 471 583 C3H Transcription Factor Family AT4G01270 45.455 2.96e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00900 K11985 - qsa:O6P43_017679 566.614