Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00897 ATGGATCTTCCAGGTCTCAATACTATCCCACCTACCACGATGCCAATTGTTGCTCCTCCTGCTGTCACCCCTGCTTCGAATTCAAACTCTGTGCCGTCGACGATGGCAACGGATGGTGCGCCAATTGTGCTGGAGGATCCAAATAAGAAAGTGCGGAAGCCTTATACAATTACCAAGTCTAGAGAGAGCTGGACTGAACAAGAGCATGACAAGTTTCTAGAAGCTCTTCAATTATTTGATCGTGACTGGAAGAAGATCGCAGCATTTGTGGGGTCCAAGACAGTTATCCAGATACGCAGCCATGCACAAAAATATTTTCTAAAGGTTCAGAAGAGTGGAACTAGTGAACATGTACCACCTCCTCGACCTAAGAGAAAAGCTGCTCATCCATACCCACAAAAGGCCCCCAAAGTTACTGTCTTGGAAGCTTACAGTGAACCTGCATACATTTTTCGGCCAGATTCATCAGCTGCTCTAGGAAGTCCAGTGACCAATGTTCTTTCATCTTCTTGGAGCCATAATATTACACCAGTCAATGTGCCACAACTGACTGCAGATGACCAGAGTATGGTGAATCAAGCTAGAGGAAACAATTGTTGCTTCAGTAGCAGTAACAAGAGCACTCCAAGTAGTCGGCCAAATTGCCCAATGTTGGATCAGGGGAACCTTGACAAGTCAATGAGAGTAATGCCAAACTTTGCACAAGTGTACAGTTTCATTGGTAGTGCATTCGATCCAAATGTCACGGGTCAGCTGCAAAGACTGAAGAAAATGGACCCCATTAACATGGAAACAATATTGCTGTTGATGAGAAACCTTTCTGTTAATTTAATGTGTCCCGAGTTTGAAGATGATAGGAGACTACTTTCATCATATGATCCTGACTTTGAGAAGGTAAATTTTGGGAGTCCTTTGAACAATTCCCACAGCGATAAATCAGGTACTGTGGTTCTATCCGCTTAA 963 0.4382 MDLPGLNTIPPTTMPIVAPPAVTPASNSNSVPSTMATDGAPIVLEDPNKKVRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIAAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKVTVLEAYSEPAYIFRPDSSAALGSPVTNVLSSSWSHNITPVNVPQLTADDQSMVNQARGNNCCFSSSNKSTPSSRPNCPMLDQGNLDKSMRVMPNFAQVYSFIGSAFDPNVTGQLQRLKKMDPINMETILLLMRNLSVNLMCPEFEDDRRLLSSYDPDFEKVNFGSPLNNSHSDKSGTVVLSA* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00897 320 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Pte4g00897 320 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Pte4g00897 320 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Pte4g00897 320 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Pte4g00897 320 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Pte4g00897 320 MobiDBLite consensus disorder prediction 111 133 - -
Pte4g00897 320 MobiDBLite consensus disorder prediction 301 320 - -
Pte4g00897 320 CDD SANT 63 106 IPR001005 -
Pte4g00897 320 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Pte4g00897 320 SMART sant 60 108 IPR001005 -
Pte4g00897 320 Gene3D - 64 111 - -
Pte4g00897 320 PANTHER SWI/SNF COMPLEX-RELATED 22 278 - -
Pte4g00897 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00897 Pte-Chr4 40062959 40067302 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte4g00897 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00897 - - gmx:778090 373.629