Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00888 ATGAGTTTGACAGAATTGATTACGAGGGTCGAAGCGATTTGTAAGAAGTATGACAAATACGACCTTGACAAGCAAAAGGAAGCTAACAACGTTCATGGCGACGATGCTTTTGCTCGTCTCTATGGAGTCTTTGAGGAAGAAGTTGTTGCTATTGAACAGAAATCAGAAACGGTGGCAACTGAGAAGAACAGAGCTATTGCTGTAGCTGTGAATGCTGAAATTCGACGAACAAAGGCTCGTTTACTCGAAGAGATTCCCAAATTACGAAGGCTTGCTAATAAAAAGGTGAAAGGGCTCTCAGCTGAAGAGATAGAAGCTAGAGATGACTTCGTTTCTGCTCTGAAAGAGAGAATTGAAGGTATACCAGATGGGACAACAAGTGCAGCAAAGCAAACCGGTGGTTGGGCAGCTTCAGCCTCGCATACTGGGTTTAAATTTGACTCCAAACCAGATGAGGGATTTGACAGTGATTACTTTCAACGAACTGAAGAGGGCGATCAATTCAAGCAGGAGTATGAGATGCGAAAAATTAGGCAGGCAAGTTTGGATGTTATAGCTGAAGGATTGGAAACCTTGAAGAACCTGGCACATGACATTAACGAGGAATTGGATAGGCAAGTACCTCTGATGGATGAAATGGAAGATAAGGTCGATAGGGCACGTGCTGACCTTAAAAATACCAATGTGAGACTTAAGCATACTATCAATCAGTGTGCTCAAGTGAACCTATTGTTTTGGCTAGTACTTGCAACGTCGGCAGACGACACTGGTGTGCTGCTACTTTTGCGGAAGCAAAATGTCTAG 804 0.4328 MSLTELITRVEAICKKYDKYDLDKQKEANNVHGDDAFARLYGVFEEEVVAIEQKSETVATEKNRAIAVAVNAEIRRTKARLLEEIPKLRRLANKKVKGLSAEEIEARDDFVSALKERIEGIPDGTTSAAKQTGGWAASASHTGFKFDSKPDEGFDSDYFQRTEEGDQFKQEYEMRKIRQASLDVIAEGLETLKNLAHDINEELDRQVPLMDEMEDKVDRARADLKNTNVRLKHTINQCAQVNLLFWLVLATSADDTGVLLLLRKQNV* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00888 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
Pte4g00888 267 CDD SNARE_Qc 182 233 - -
Pte4g00888 267 Coils Coil 210 230 - -
Pte4g00888 267 SUPERFAMILY SNARE fusion complex 179 233 - -
Pte4g00888 267 ProSitePatterns Syntaxin / epimorphin family signature. 178 217 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte4g00888 267 PANTHER GOLGI SNARE BET1-RELATED 130 249 - -
Pte4g00888 267 SMART tSNARE_6 167 234 IPR000727 -
Pte4g00888 267 Gene3D - 180 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00888 Pte-Chr4 39967031 39969639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00888 1 253 SNARE and Associated Proteins AT3G09740 59.696 4.87e-105 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00888 K08506 - qsa:O6P43_017651 336.265