Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00887 ATGGGAAGCTGTTGCTGTTCTGCCAGAAAACCTCATTTCCATGGACCACCTTTATATTACTATTGCCCAACAAGGCTTGAAGTGCAAGATTCCTTGACTTCTGCTGATGGTACTGCCTCTTCATTCACTGCCAGACTGTTGGTGAGCCTGGATCTGGAAACATCAATACCTGATACTTATCGATCCCCTCCCACTCCTTTGCCTTATGATGTCGACTTGGGGTGTCAACCATCGAGAAATCCTGAGCCTGGACTAGAAACAATTGGTGGTGTTAGTCTTCAAAGCTTAATGGCATGTGATGAAATTGAGGAACCGGATCCCAAATCTAAAGCTAATTCTTTACTTTCTCCAACAAAGTTAGAACAATCAAAATCAAACGAACCTTCTGTACTACAAATTGAGGAGGAGGATGTCTGTCCCATTTGTCTTGAAGAATACAGTGTGGAAAATCCAAAAAACTTGACAAAGTGTGAGCATCACTTTCACTTATCATGCATCCTTGAATGGATGGAAAGAAGTGACTCATGTCCTATATGTGACCAGGTCTGCTACTTGCTGATGCACATACTCAACTTCTTTAGTATGATAAACCATGAGCATTTACTTATACAATCCCTGCATATACAAGTACATGCAGTCTGA 642 0.4143 MGSCCCSARKPHFHGPPLYYYCPTRLEVQDSLTSADGTASSFTARLLVSLDLETSIPDTYRSPPTPLPYDVDLGCQPSRNPEPGLETIGGVSLQSLMACDEIEEPDPKSKANSLLSPTKLEQSKSNEPSVLQIEEEDVCPICLEEYSVENPKNLTKCEHHFHLSCILEWMERSDSCPICDQVCYLLMHILNFFSMINHEHLLIQSLHIQVHAV* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00887 213 MobiDBLite consensus disorder prediction 111 127 - -
Pte4g00887 213 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Pte4g00887 213 MobiDBLite consensus disorder prediction 104 127 - -
Pte4g00887 213 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 35 183 - -
Pte4g00887 213 SMART ring_2 139 179 IPR001841 -
Pte4g00887 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 210 IPR013083 -
Pte4g00887 213 SUPERFAMILY RING/U-box 131 192 - -
Pte4g00887 213 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Pte4g00887 213 Pfam Ring finger domain 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00887 Pte-Chr4 39960423 39964507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00887 1 181 C3H Transcription Factor Family AT4G00335 50.549 1.18e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00887 - - qsa:O6P43_017646 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00887 4 39960423 39964507 Pte4g00887 4 39960423 39964507 RCT