Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00886 ATGTTTCACTTTGCGTTTCTGGTTCTCCTATTAGTAACTTCAAGAATCAATGGTGTTTCTGGATTTGAATCAAACCAAGTAGATTCTCATTCAAACATCCATAGGAAAATTCAAAATGGAATCTTTAGACCTGATTTGTCGGCCCCCAGTTCATCAAATTTTACTTCCACATATGGAAAAGTTGCTACTGAAGATGGCACAATTATTATTCAAGCTAAGGATCGTCCTGTGAATTCAAGTTCTCATCTTTTTGGTGGTGATGTTGTTGTTTCGGTCAGAAGAAGGAACCTTGAGCTTGATACTGTTTTGATAAACGGAAATGCGACCATTCGAAGTGCAAATCACACATTCGGGCTTGGGTTTTTCACTACTGCAACGGACGGTGAAGCCAACTGGTACTTAGGCATTTGGTACACTACTGTTCCTACACCAACATATGTTTGGGTCGCCAATAGGGAAAAGCCCTTGAAGAATCAGAACCAATCTTCACTTAAGATTACGGAAAATGGCAAATTAGCAGTGATAGATTCAGAGAATTCAGCTGTGTGGATGAGTACAAACACCGAGGCCGCAACAAAAATGGATCTTTTGGAAAATGGGAATCTAGTTTTGCTTAATTCTGAAGGTAATATCATATGGCAAAGCTTTGATCATCCTACAGATACATTATTACCTGGTATGAACCTTACTATCGATAAATACTTAGTCTCATGGAAAAACTCCTATGACCCTTCACCGGGTTTGTATTCTCTGAGGATGAAACCACCACAATATGGTGAGTTTGAGCTTGTCTTTAATGGTAGTGAGACTTACTGGAAAACTGGGACTTGGACCGGTGAGGAGTTCAGTAATGTGCCTGAGATGACAATTCCGTACATCTATAGGTTCTATTTTGACGACCCATTTACTCCCATAGCGTCATTTGGGTTCACGGAGAAGGCGTTAGATAATGGATCAAGTCCACCATTAACTAAGTTTACACTGGAGTCCTCAGGTCAGTTGCAACAGTACACATGGTCTGAACAGATACAGAATTGGGACAAATTCTGGGTACGTCCTGAGACTAAATGTGGGATTTATAGCTTTTGTGGTAACTTTGGGGTTTGCGATAATGTAACTTCAAATTCTTGTGATTGTGTTGTGGGTTACACCCCTGCTGATGATAGAATGTGGGAGGCTGGTGATTATTCTAATGGTTGTTGGCGAAATGGCAACGACACATGTGATGAGAACGATGAGTTTGAAGAGCTTGGTGATGTAACCTTTGAAGGAGCCACAAAGGTATCATATTCTGCTACTAGAGCTTTTTGTGAGAAGTCTTGCTTAGGTACTTGTCCTTGTATTGGTTTCTCTTACAATGAGAGGGACAAACAATGTGGCAGATTCTCTGGTTCTCTTCTAAATCTGAGGAATTCGACTACGGATGGCACAAGGGGAGATGCATTTTACATCAGAGTTAAAAGAGCAGGTCCTCGTAGGAAGAGTTTGAACCGTGTAGTATTGACTGCTACCATTATTGCATCAATTATTGCTTTAGGAATTGTGGTAGTAACGTTGTGCATAGTATTGAAGCATAGACGGATTAAAAAGAAAGTGGCTGAAAATAGTGTTTTTTCGGCTATGAATGTCAGGGTCTTTTCTCACAAAGAACTGCAATTGGCGACACGGGGGTTCTCTGAGAAGATCGGACATGGTGGCTTTGGGACTGTGTTTCAAGGAGAGCTATTAGATTCTTCTCTTGTCGCTGTAAAACGTCTAGAAAGGCCAGGAGGTGGAGAGAAAGAGTTTCGTGCAGAAGTTTGCACCATTGGAAATGTTCAACATATAAATCTTGTGAGGCTAAGAGGGTTCTGTGCTGAAAATTCTCATAGATTGCTGGTATATGAATATATGCCAAATGGTGCTCTTAGTGCATATCTACGTCAGGACGGCCTAAGCTTGAGCTGGGATGTGAGGTCTCGTGTAGCAATTGGAACAGCCAAAGGTATAGCATATTTGCACGATGGATGCAGAGATTGCATTATCCACTGTGATATCAAACCTGAGAATATACTTCTTGATAAAGATTTCACAGCAAAGGTTTCAGATTTTGGGTTGGCAAAGTTGATTGGAAGAGACTTCAGTCGTGTTTTAGTGACAATGAGAGGTACATGGGGTTATGTTGCACCTGAGTGGATTTCTGGAGTACCCATCACTACAAAAGCTGACGTATATAGCTATGGGATGACTCTATTGGAGTTAATCAGTGGTCGGAGGAATGTGGAGGGACCCCCTTCGGTTAGCCGTGTAGACGGTAGCTGTGGAGGAGAAAAGTGGTTCTTTCCTCCATGGGCAGCTCAGCAGATTATTGAGCAGAATGTTTCTGCCGTTATCGATAGTCGGCTTGGTAATGCATATAATATTGAGGAGGCCAAGCGACTGGCAATGGTAGCAGTGTGGTGTATACAGGATGATGATGCAATGAGGCCTACGATGGATATGGTTGTTAAAATGTTAGAAGGGGTAGTAGAAGTGAATATCCCTCCCCCACCAAAATTGTTACGAGCATTAGTTTCTGGGGATTCTGCTGTTAAAGTCGATTCTGGCAGTGAGGTCTCCGGAAGAGTTAGCTTCTTGGGTTGCAATGTCGAAGTCTCCAGTAATGGTTCTCAGTGA 2655 0.42 MFHFAFLVLLLVTSRINGVSGFESNQVDSHSNIHRKIQNGIFRPDLSAPSSSNFTSTYGKVATEDGTIIIQAKDRPVNSSSHLFGGDVVVSVRRRNLELDTVLINGNATIRSANHTFGLGFFTTATDGEANWYLGIWYTTVPTPTYVWVANREKPLKNQNQSSLKITENGKLAVIDSENSAVWMSTNTEAATKMDLLENGNLVLLNSEGNIIWQSFDHPTDTLLPGMNLTIDKYLVSWKNSYDPSPGLYSLRMKPPQYGEFELVFNGSETYWKTGTWTGEEFSNVPEMTIPYIYRFYFDDPFTPIASFGFTEKALDNGSSPPLTKFTLESSGQLQQYTWSEQIQNWDKFWVRPETKCGIYSFCGNFGVCDNVTSNSCDCVVGYTPADDRMWEAGDYSNGCWRNGNDTCDENDEFEELGDVTFEGATKVSYSATRAFCEKSCLGTCPCIGFSYNERDKQCGRFSGSLLNLRNSTTDGTRGDAFYIRVKRAGPRRKSLNRVVLTATIIASIIALGIVVVTLCIVLKHRRIKKKVAENSVFSAMNVRVFSHKELQLATRGFSEKIGHGGFGTVFQGELLDSSLVAVKRLERPGGGEKEFRAEVCTIGNVQHINLVRLRGFCAENSHRLLVYEYMPNGALSAYLRQDGLSLSWDVRSRVAIGTAKGIAYLHDGCRDCIIHCDIKPENILLDKDFTAKVSDFGLAKLIGRDFSRVLVTMRGTWGYVAPEWISGVPITTKADVYSYGMTLLELISGRRNVEGPPSVSRVDGSCGGEKWFFPPWAAQQIIEQNVSAVIDSRLGNAYNIEEAKRLAMVAVWCIQDDDAMRPTMDMVVKMLEGVVEVNIPPPPKLLRALVSGDSAVKVDSGSEVSGRVSFLGCNVEVSSNGSQ* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00886 884 Pfam PAN-like domain 408 468 IPR003609 -
Pte4g00886 884 SMART blect_4 101 219 IPR001480 -
Pte4g00886 884 SMART serkin_6 556 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00886 884 Pfam S-locus glycoprotein domain 272 385 IPR000858 GO:0048544
Pte4g00886 884 Gene3D Phosphorylase Kinase; domain 1 518 630 - -
Pte4g00886 884 ProSiteProfiles Bulb-type lectin domain profile. 95 217 IPR001480 -
Pte4g00886 884 CDD B_lectin 101 219 IPR001480 -
Pte4g00886 884 ProSitePatterns Protein kinases ATP-binding region signature. 562 584 IPR017441 GO:0005524
Pte4g00886 884 FunFam serine/threonine-protein kinase PBS1-like 524 630 - -
Pte4g00886 884 PANTHER OS07G0415500 PROTEIN 77 845 - -
Pte4g00886 884 Pfam D-mannose binding lectin 145 234 IPR001480 -
Pte4g00886 884 CDD STKc_IRAK 562 834 - -
Pte4g00886 884 SUPERFAMILY alpha-D-mannose-specific plant lectins 131 277 IPR036426 -
Pte4g00886 884 Pfam Protein kinase domain 559 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00886 884 Gene3D - 90 218 IPR036426 -
Pte4g00886 884 ProSiteProfiles PAN/Apple domain profile. 408 487 IPR003609 -
Pte4g00886 884 PIRSF SRK 79 881 IPR024171 GO:0004674
Pte4g00886 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 674 686 IPR008271 GO:0004672|GO:0006468
Pte4g00886 884 Gene3D Transferase(Phosphotransferase) domain 1 631 840 - -
Pte4g00886 884 FunFam S-receptor-like kinase 5 631 841 - -
Pte4g00886 884 ProSiteProfiles Protein kinase domain profile. 556 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00886 884 SUPERFAMILY Protein kinase-like (PK-like) 538 833 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00886 Pte-Chr4 39954396 39957840 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00886 546 842 Receptor kinase-like Gene Family AT5G20050 48.397 3.15e-79 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pte4g00886 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00886 - - qsa:O6P43_027250 1092.8