Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00873 ATGGCACTGTTGAGTCCTGCCCCTGCAATCACAGAAAGTGTCCACTCTCTTAGCATTCGTGATATTGGGTTAGCAGGAACAATGGCTAGAAGCTCAGAGATTGTAGAGGGACCCTCCGCAGGCTTAACCAATGATACCATCTATGTTGCTGTATCAGCAGAAGTTAAGGAATGCAAGTCAATTTTGATGTGGGTGATTGAGAATTATGGATTGCAGAGAATTTGCATCCTTCACGTCCATGTGCCTGCTCAAATGATTCCCTTAATGGGAACAAAGTTTGCCGCAAGTGCTCTCGAAGAACAGGAAGTTGCAGCTTACAGGGAAATTGAAAGACAAACCATGTGTAAACGTCTGGGTGACTATCTTCTCATATGTAAAAGGAATAAGGTACCGGCAGAAAAACTGTACCTGGAAATGGATTGCATAGAAAAGGGTATTGTAGAACTCATTTCACGACATGGTATCCAAAATCTAGTTATGGGAGCAGCGTCAGATAGGCACTTCAGAAAAATGACGGACCTCAGATCAAAGAAAGCAATCTATGTGCGTCAACATGCTCCTCCTTACTGTTGCATCCAATTTGTTAGCAAAGGGAGTCTTATCCAGGCCAGGGTTGCTAGTGTGGACGCAAGTGCCTTGGGAGTCAGCTTGCCATTACTGCAAGAACTATCCTACTCTGACTCTGGACAGTCCCATCCCATGAGATCCCTAACTACTCCCAAGTTACCAAGTAATCGCCCAAAACTCAGTAGTCCTGCTGAAGTTTTTCTCCGCAGAGTAAAAACTGCTAGAGAAAGTCTACTATTTCCTGTTTCGTCTTCAGATGATATTCAAGTGCTCTCAACTCTAGATGCTAAGCTGTTTACTAACGCTACTTCTAATGAATCTGCGCGGAAATCGAGTGTCCCTCTTCTAACTATGTCAACAAGCTCATTTGATGGTGCATTGGAAGCAACACCTGGCACTGATATAATTGCTGAGGGAAGTGACTACCTGCCAGCATCAAGCACAAATCTCAACGGAAAAGTAGATCCTGGATCATCTCCCGCAAGTGATAGGGATATAGATGATGTTCTCTTAGATCAACTCGAGCAAGTCAGGTGTGATGCCAAGAATGCAAGGACAGAAGCATTTCTACAGTCTATTAGGCTTGGAAGAGCTGAGAAAGATGCCATTGATGCTATACGTAGGGTTAAAGTTTCTGAAGCCTTGTATGCTGTGGAATTGAAAATGAGAAAGGAAGTTGAGCAAGCTCTTGAGAAGGAAAGGGAAGAACTTGAAAAGCTCAAGGGACAGCGAGATGAAGTGAAGGAGGAACTCCAACTTGCCCTAGAAGAGAAAGCCTCACTGGAGAGCCAAGTAGCTGCATCCGAACAAATGGTAGAAGATTTGAAACAGAAGTTGCTATCTGGAGTGGATCTTCTACAGAATTATAAGAAAGAGCGAGATGAGTTGCAGATTCAGCGTGACAGTGCATTAAGAGAAGCTGAAGAATTGAGGAAACAAGGAGAGGCTTCATGTACGCACATGCCACAGTTCTTCTCCGACTTCTATTTTTCAGAGATTGTGGAAGCCACAAGAAACTTTGATTCTTCTTTGAAGATTGGAGAAGGAGGATATGGAAGCATCTATAGAGGTAGCCTGCGTCACACAGAGGTTGCTATAAAAATACTCCACACTAATAGCTCGCAGGGTCCATCAGAATTTAAACAAGAGGTGGATGTGTTAAGTAAATTGAGGCATCCCAATCTTATTACACTTATTGGAGCTTGCCCAGAGTCCTGGATTCTTGTTTATGAGTACCTACCGAATGGGAGCCTTGAAGATCGTCTTAATTGCAGGGATAACAGTCCTCCTTTACCTTGGCAAACTCGAATACGCATTGCTACTGAGCTTTGCTCTGCCCTTATCTTTCTTCATTCATGCAAACCTCACTGCATTGTTCATGGTGACTTAAAGCCAGCCAATATTCTCCTTGATGCAAACATGGTTAGCAAGCTTAGTGATTTTGGAATATGCCGTGTACTATCTCGAAATGATCGTACTAGTAGCAATAGTACCCTGTGTAGGAGAACTGATCCCAAGGGCACCTTTGTGTATATGGACCCTGAATTCCTTGCCTCTGGGGAGCTCACCACAAAGTCAGATGTTTATTCATTGGGAATCATATTGCTTAGATTGCTTACAGGAAGACACGCCCTGGGGATAATGAAAGAAGTTCAGTATGCATTAGATACTGGTAGGTTGAACAGCATCTTGGATCCTTTGGCGGGGGACTGGCCTTATGTGCAGGCTGAACATTTGACTCGGTTAGCGCTGAGGTGTTGCGACATGAACCGAAAAGGTAGGCCAGATTTGACATCAGAGATCTGGAGAATTTTAGAACCTATGAGGGCTTCTTGTGGGTGTACATCCTCTTTCCAGTTAACTTCTGAAGTTCTTTGCCAACCTCCTCCTTATTTCATCTGCCCAATTTTCCAAGAAGTTATGCGGGATCCTCACGTTGCTGCTGATGGTTATACATATGAAGCTGAGGCTATAAGGGGATGGCTAGAAAGTGGTCATGACACCTCTCCCGTGACAAATGCCAAGTTTGCACATAGCAATCTTGTCCCCAACCATTCCCTTCGTTCTGCAATTCAAGAATGGCTACAACATCATTGA 2664 0.4392 MALLSPAPAITESVHSLSIRDIGLAGTMARSSEIVEGPSAGLTNDTIYVAVSAEVKECKSILMWVIENYGLQRICILHVHVPAQMIPLMGTKFAASALEEQEVAAYREIERQTMCKRLGDYLLICKRNKVPAEKLYLEMDCIEKGIVELISRHGIQNLVMGAASDRHFRKMTDLRSKKAIYVRQHAPPYCCIQFVSKGSLIQARVASVDASALGVSLPLLQELSYSDSGQSHPMRSLTTPKLPSNRPKLSSPAEVFLRRVKTARESLLFPVSSSDDIQVLSTLDAKLFTNATSNESARKSSVPLLTMSTSSFDGALEATPGTDIIAEGSDYLPASSTNLNGKVDPGSSPASDRDIDDVLLDQLEQVRCDAKNARTEAFLQSIRLGRAEKDAIDAIRRVKVSEALYAVELKMRKEVEQALEKEREELEKLKGQRDEVKEELQLALEEKASLESQVAASEQMVEDLKQKLLSGVDLLQNYKKERDELQIQRDSALREAEELRKQGEASCTHMPQFFSDFYFSEIVEATRNFDSSLKIGEGGYGSIYRGSLRHTEVAIKILHTNSSQGPSEFKQEVDVLSKLRHPNLITLIGACPESWILVYEYLPNGSLEDRLNCRDNSPPLPWQTRIRIATELCSALIFLHSCKPHCIVHGDLKPANILLDANMVSKLSDFGICRVLSRNDRTSSNSTLCRRTDPKGTFVYMDPEFLASGELTTKSDVYSLGIILLRLLTGRHALGIMKEVQYALDTGRLNSILDPLAGDWPYVQAEHLTRLALRCCDMNRKGRPDLTSEIWRILEPMRASCGCTSSFQLTSEVLCQPPPYFICPIFQEVMRDPHVAADGYTYEAEAIRGWLESGHDTSPVTNAKFAHSNLVPNHSLRSAIQEWLQHH* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00873 887 ProSitePatterns Protein kinases ATP-binding region signature. 535 556 IPR017441 GO:0005524
Pte4g00873 887 Gene3D Phosphorylase Kinase; domain 1 507 601 - -
Pte4g00873 887 CDD RING-Ubox_WDSUB1-like 818 873 - -
Pte4g00873 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Pte4g00873 887 PANTHER OS02G0152300 PROTEIN 47 882 - -
Pte4g00873 887 ProSiteProfiles Protein kinase domain profile. 529 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00873 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 816 887 IPR013083 -
Pte4g00873 887 Gene3D Transferase(Phosphotransferase) domain 1 602 802 - -
Pte4g00873 887 Pfam Protein kinase domain 533 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00873 887 SMART Ubox_2 820 883 IPR003613 GO:0004842|GO:0016567
Pte4g00873 887 FunFam receptor-like protein kinase FERONIA 493 601 - -
Pte4g00873 887 SMART serkin_6 529 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00873 887 MobiDBLite consensus disorder prediction 227 246 - -
Pte4g00873 887 SUPERFAMILY RING/U-box 810 886 - -
Pte4g00873 887 CDD STK_N 46 198 - -
Pte4g00873 887 MobiDBLite consensus disorder prediction 227 249 - -
Pte4g00873 887 Pfam U-box domain 818 887 IPR003613 GO:0004842|GO:0016567
Pte4g00873 887 ProSiteProfiles U-box domain profile. 816 887 IPR003613 GO:0004842|GO:0016567
Pte4g00873 887 Coils Coil 405 467 - -
Pte4g00873 887 SUPERFAMILY Protein kinase-like (PK-like) 507 792 IPR011009 -
Pte4g00873 887 Coils Coil 475 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00873 Pte-Chr4 39825163 39831439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00873 1 887 U-box Gene Family AT2G45910 52.567 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pte4g00873 Pkinase 9.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00873 - - qsa:O6P43_027236 1071.23