Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00871 ATGGAGTCAAGTACTTCTTATAAGGACGGCTTAGAGAGAAGTGAACAAATGAGAGACCTTTACAAGTATTTCCTTAAAGGTGAACCTGAATTGGAACAACCCAAGAGGCATTATGCCGAATTGTCTTCTGAGGATCTCACAGATGCAGAGTGGTATTATCTGCGGCGTAGAGCTCACGTAAAGGCGGGTGTACAAGTTGTCACTTGTCAAACACTTGCCTTCACCTTCTACCCCTGTATGTCCCTTTTACGCTGTTTCGAAAAGCCAATAAAATTCTGTCCGTACTTTCAGCTTCAGCTGTTCAGTTCACTGCTCCGATCTCGCTCTCTAACCGACTCAGTTAGATTGTGTTCTTCTTGCTTGGGAATATACTTGTTTATTTTTATTGGCATTGCTTTGAGTGAGCTTTTGAGCTCAGGACGACTCCGGAAACAAATGCAAACTAAGAGAGAACCTTGTCGAAACTTTCAGCGTGGCAGCTGTCGCTATGGAGATAGGTGTAAATTTCTTCATGTGATGCAGCAGCAGCCAAAGTCCAGTGTCTTTGGGACACAAAATAGTTTACACCAGCAGCAGAAGACAAATCCTTTTGGATTTGGATCTCAGACTACTGCTCAACAGCAGTCTAATCCTTTTGGATTTGGAACTCAGAGTAGTTCTCAACAACAGTCCAATCCTTTTGGGTTTGGCTCTCAGAGTGGTGCACAATTACACCAAAAACCTAATCCTTTTGGTTTTGGGTCTCAGACTAACTCACAACAACAACAGCAAAAGACCAATCCTTTTGGTTTTGGTGTTCAAGGCGGTTCTCAATCAAAACAGAATCAACTTAAGCCTTTTGAAAATAAATGGACTCGTTCAACTGCTGGTGGAGCCACACAACAATCTGACAATCAATCCCAGGCTGCTAACCACAAGTGCACAGATCCTGAGACATGCAAACGCCAAATTGCTGAAGATTTTGAACATGAGAGACCACTTTGGAAGCTGACATGCTATAGTCATAGCAAAAATGCTCCTTGTGATATTGTTGGTGATATAAGTTATGAAGAATTGCGGGCAGCAGCTTATGATGATGCTAAGCGTGGAATGAGTTTTGAATCAATAGTTGAGAGAGAGAGGAATTTGCTAAATTCTAAATTAGCGGAGTTTGATAATCTACTTCAGAAGCCTTGTAAAAACCCAACAAATTCATCTGACTCCATCCAAAGCCCTTTGATTGGATTAAATGCAAATGCATTTTCTCAGAGTGTGCAAAATCAAAATCCTCCAACAACCTCAAGCTTCGGTCAATTGAATGCACCACTGCATACAGATATTGGAATAAGGCATTCAATGGCACCCAATTACACTCCTGCACAGCAGAGTTCATTTCAAAATCAAGGTCCATTTGCAAGCCAATCATCCAACCAGACATTCGGGTCTTCATTTGCACCAAATTTAGGAGGTTTCAGTAGCATGGTCACAGCAAATGCAGATGGCAATTCCTTCTCTACATCAGCAAGGGCAACAAATATAACCAATTCATTTGCCAATCCTTCAGCCTTTACTTCAGGTGGCCCTGGAACAAGTACATTTTTTACTCCAACCAATGGTGTCCGGTCTGTGAATTCATTGCAAACAGATAAAACTTCTGTAGATGCCAGCATCTGGCTAAAAGAAAAATGGACTCCTGGAGAGATTCCAGAAGAAGCACCTCCTGATATCTACGTCAAATGA 1719 0.4183 MESSTSYKDGLERSEQMRDLYKYFLKGEPELEQPKRHYAELSSEDLTDAEWYYLRRRAHVKAGVQVVTCQTLAFTFYPCMSLLRCFEKPIKFCPYFQLQLFSSLLRSRSLTDSVRLCSSCLGIYLFIFIGIALSELLSSGRLRKQMQTKREPCRNFQRGSCRYGDRCKFLHVMQQQPKSSVFGTQNSLHQQQKTNPFGFGSQTTAQQQSNPFGFGTQSSSQQQSNPFGFGSQSGAQLHQKPNPFGFGSQTNSQQQQQKTNPFGFGVQGGSQSKQNQLKPFENKWTRSTAGGATQQSDNQSQAANHKCTDPETCKRQIAEDFEHERPLWKLTCYSHSKNAPCDIVGDISYEELRAAAYDDAKRGMSFESIVERERNLLNSKLAEFDNLLQKPCKNPTNSSDSIQSPLIGLNANAFSQSVQNQNPPTTSSFGQLNAPLHTDIGIRHSMAPNYTPAQQSSFQNQGPFASQSSNQTFGSSFAPNLGGFSSMVTANADGNSFSTSARATNITNSFANPSAFTSGGPGTSTFFTPTNGVRSVNSLQTDKTSVDASIWLKEKWTPGEIPEEAPPDIYVK* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00871 572 SMART c3hfinal6 147 173 IPR000571 GO:0046872
Pte4g00871 572 MobiDBLite consensus disorder prediction 448 471 - -
Pte4g00871 572 MobiDBLite consensus disorder prediction 192 307 - -
Pte4g00871 572 Gene3D - 140 210 - -
Pte4g00871 572 MobiDBLite consensus disorder prediction 192 309 - -
Pte4g00871 572 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 301 423 - -
Pte4g00871 572 ProSiteProfiles Zinc finger C3H1-type profile. 147 174 IPR000571 GO:0046872
Pte4g00871 572 SUPERFAMILY CCCH zinc finger 145 174 IPR036855 GO:0046872
Pte4g00871 572 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 172 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00871 Pte-Chr4 39804559 39818306 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte4g00871 zf-CCCH 3.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00871 K14321 - qsa:O6P43_014500 409.453