Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00861 ATGGGAAGGACTCCCTGCTGTGACAAGAAGGGCTTGAAGAAAGGACCATGGACGCCTGAAGAGGATGATCTTCTTGTTAATTATATTCAGAAAAATGGTGGACATGGAAGTTGGCGTTCCCTTCCCAAGATGGCAGGTCTTCTTCGCTGTGGTAAGAGTTGCAGGCTGAGATGGACAAACTATCTGAGACCAAACATAAAACGTGGTCCGTTTACCATTGAAGAAGAAAAGCTTGTCATACAGCTTCATGGCATTATTGGAAATAGGTGGGCTGCAATTGCCTCTCAGTTGCCAGGAAGAACAGACAATGAGGTAAAGAATTTATGGAACACTCACTTAAAGAAGCGCCTTGTTGGTGTGGGACTTGCCCCAAAATCATATGAGCCATTCACCTCAGACTTTGCAGCTGCAGCCATGGCATCCACATCCTCTTCCACTCGACACATGGCACAGTGGGAAAGTGCAAGGCTTGAAGCAGAAGCTCGGCTTTCAAGGGAGTCATCACTCTTCAATAATCCAACTTTATGCAGAAGTACTACTGATGTTGACTTCTTTCTGCGCCTATGGAACTCTGAAGTTGGAGAAGCATTTAGAAAAGTAAAATTTGAAACAGATCATAGCACATGCCAGAGTCCAAAGTCTCAGAATTCAATCTCAACTAAATGTGTTTCAGTCTCTGCCATAACCACTGAGGTTGTTGTCACTGATAGCGCAGCAGCACCCTCGTACAAAGCAAGCAATCAAAATGAATATGCGGGAAAGTCGTGTCTAGAAGAGTTGATGCCTGTATCTGATTCATCAAGCTCCAATGAATTAGGCGATTCATCAGACACTGCACTGCAGCTGCTTTTGGATTTCCCCATTAACAATGACATGAGTTTCTTAGAAACCAACCTTGATAAGTATGCCACAACTTCAGTCAGCTTGTTGATGGATAACCCTTGA 945 0.4402 MGRTPCCDKKGLKKGPWTPEEDDLLVNYIQKNGGHGSWRSLPKMAGLLRCGKSCRLRWTNYLRPNIKRGPFTIEEEKLVIQLHGIIGNRWAAIASQLPGRTDNEVKNLWNTHLKKRLVGVGLAPKSYEPFTSDFAAAAMASTSSSTRHMAQWESARLEAEARLSRESSLFNNPTLCRSTTDVDFFLRLWNSEVGEAFRKVKFETDHSTCQSPKSQNSISTKCVSVSAITTEVVVTDSAAAPSYKASNQNEYAGKSCLEELMPVSDSSSSNELGDSSDTALQLLLDFPINNDMSFLETNLDKYATTSVSLLMDNP* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00861 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pte4g00861 314 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte4g00861 314 SMART sant 67 115 IPR001005 -
Pte4g00861 314 SMART sant 13 64 IPR001005 -
Pte4g00861 314 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte4g00861 314 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pte4g00861 314 CDD SANT 16 62 IPR001005 -
Pte4g00861 314 Gene3D - 70 117 - -
Pte4g00861 314 Gene3D - 11 68 - -
Pte4g00861 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte4g00861 314 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte4g00861 314 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pte4g00861 314 FunFam Myb transcription factor 11 68 - -
Pte4g00861 314 CDD SANT 70 113 IPR001005 -
Pte4g00861 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 260 - -
Pte4g00861 314 FunFam MYB transcription factor 70 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00861 Pte-Chr4 39729459 39731602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00861 1 303 MYB Transcription Factor Family AT3G61250 59.283 7.50e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte4g00861 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00861 K09422 - qsa:O6P43_017601 447.588