Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00860 ATGGAAGCTAGAGACGGCATTTTTGGGGTTACGGTGATTGGAGCTGAAGCTCCATCAGCTTATCATGTGGCACCAAGATCGGAGAATCCAAGCCAGGGCCATGTTGATGAAGCTGCACCGCCAGTCGTGAATGCCTCACCTGTGGTTGTTGGATTGGATGGGGTGCCTGGGAAGAAAAAACGAGGTAGGCCAAGGAAATATGGTCCAGATGGGAGCGTAACCATGACATTATCACCAATGCCCCTGTCTACTTCAGCTCCACCAGCCAACAGTAATCTCTCAAGTGGGAAGCGGAGTAGAGCGCGTGGGGTGGAGTACAAGCAGAAAAAAGGACTGGGAATGGAAGAACATCTAGGTGACATGAATGGTTCTTCTGTTGGTACAAACTTTATGCCCCATATCATCACTGTCAATACTGGTGAGGATATTACTATGAAGGTCATCTCATTCTCTCAACAAGGACCTCGAGCAATATGCATTCTTTCTGCAACTGGTGTCATATCTAATGTCACACTTCGCCAGCCAGATTCTTCGGGGGGTACTTTAACATACGAGGGTCGGTTTGAGATACTTTCCTTGTCCGGATCATTTATGCCTAGTGAGACACAAGGAACAAGAAGCAGGTCTGGAGGCATGAGTGTCTCTTTGGCAAGCCCTGACGGTCGTGTTGTTGGGGGTGGAGTTGCTGGCCTTCTTTTAGCTTCGAGTCCAGTACAGGTTGTTGTAGGGAGTTTCCTTCCAAGCAACCAGCAAGAACAAAAAATAAAGAAGCTCAAGAATGATTTTGCTGGAAATGCTGTCTCTCCAGGTAGTATTGTAGCAACCACTTCCCCTGCTGAAAGGGAGGATGGCATGGTCGGTCATGTTCTGCAAAATTCTGGCACCATCAACTCTGGCCCTATCAACTCCAACCTGAATTCTTCTGCTAACTGCGGAAGGGAGAACTGGGTTACCATGCAAACCCTGCCTGATTCGAGAAAGTCAGCCACTGACATTAACATATCTTTGCCTGATAGTTGA 1020 0.4784 MEARDGIFGVTVIGAEAPSAYHVAPRSENPSQGHVDEAAPPVVNASPVVVGLDGVPGKKKRGRPRKYGPDGSVTMTLSPMPLSTSAPPANSNLSSGKRSRARGVEYKQKKGLGMEEHLGDMNGSSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSETQGTRSRSGGMSVSLASPDGRVVGGGVAGLLLASSPVQVVVGSFLPSNQQEQKIKKLKNDFAGNAVSPGSIVATTSPAEREDGMVGHVLQNSGTINSGPINSNLNSSANCGRENWVTMQTLPDSRKSATDINISLPDS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00860 339 Gene3D - 132 261 - -
Pte4g00860 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 302 IPR039605 GO:0003680
Pte4g00860 339 ProSiteProfiles PPC domain profile profile. 127 268 IPR005175 -
Pte4g00860 339 FunFam AT-hook motif nuclear-localized protein 1-like 132 262 - -
Pte4g00860 339 CDD DUF296 132 222 IPR005175 -
Pte4g00860 339 MobiDBLite consensus disorder prediction 76 98 - -
Pte4g00860 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 249 - -
Pte4g00860 339 MobiDBLite consensus disorder prediction 47 102 - -
Pte4g00860 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00860 Pte-Chr4 39711266 39716018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00860 9 336 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 50.559 1.42e-98 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00860 - - qsa:O6P43_027099 445.277