Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00858 ATGAGTTCATCGAACCCTAGTAGCAGTGGCGGAAGTGGTGGACCATGTGGAGCATGCAAGTTCTTAAGGAGGAAGTGTGTGCCGGGTTGTATATTTGCGCCTTATTTTGATTCTGAACAGGGGGCAGCACATTTTGCAGCCGTGCATAAGGTTTTTGGGGCTAGCAATGTCTCTAAGCTGCTTCTACATATTCCAGTTCATAAGAGACTTGATGCAGTGGTTACCATATGTTATGAAGCGCAGGCAAGGCTTAGAGATCCTGTTTATGGCTGTGTTGCTCACATCTTTGCTCTTCAGCAACAGGTAGGGAGTCTACAAGCAGAGCTTTCATACTTGCAATCCCATCTCACCACATTAGAGATACCTACACCACCCCCACCCCCACCCCCACAAACTATAATACCACAAACACCACTCTCAATTGCAGACCTCCCAGCTACTTCTGTGCCAGTCACTTACGATCTATCTACAATTTTTGCACCAATGACTCAAACTTCATGGGGAGTGCAACAACGATCCATTGACCCATGTCAATTTGGTGGTGGTGGCGCACCGTCAACCCGGAGTGGAAACGATGACAGTGGCGGTGATGGTGATGGTGATCTTCAAGCATTAGCACGTGAGCTCCTCCATAGAAATGGATCCCCACGACAACGTGGCCATATGCTGTCTTCTGATGCAGCATCCTCTCCTTCACTTTCTAAGTAA 708 0.4788 MSSSNPSSSGGSGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVGSLQAELSYLQSHLTTLEIPTPPPPPPPQTIIPQTPLSIADLPATSVPVTYDLSTIFAPMTQTSWGVQQRSIDPCQFGGGGAPSTRSGNDDSGGDGDGDLQALARELLHRNGSPRQRGHMLSSDAASSPSLSK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00858 235 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
Pte4g00858 235 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Pte4g00858 235 MobiDBLite consensus disorder prediction 173 235 - -
Pte4g00858 235 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 121 - -
Pte4g00858 235 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00858 Pte-Chr4 39695919 39698753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00858 18 216 AS2 family AT2G45420 66.507 9.22e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte4g00858 LOB 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00858 K21994 - cave:132188187 306.99