Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00856 ATGGATCCAATAACAGCACATGGTCGCCCTCTGCCACCTCCATTTCTGACTAGAGATCTTCATCTACACCCTCATCACCAGTTCCAGACTCACCATCACCAAAGTACTCCTGAAGATGAACAAAGTGGTAATGGAAATTTAAGCCATGGCATCAAACGAGATCATGATGACAACGCCACCGCCACCACTACGACGAACACATCGACGACGACAATTGATGGGAAAGAATTAGTTTCCTACCAAGGTTCTGGAGAAGGAGAGATTCATAGAAGACCTCGTGGTAGACCTGCAGGTTCAAAGAACAAGCCTAAACCTCCAATCATCATAACTCGTGATAGTGCTAATGCTCTCCGATCCCATGTCATGGAAATCACAAACGGTTGTGATATTATGGAGAGTGTTTCAACTTTCGCTAAGAGAAGACAACGCGGGGTTTGCATTTTAAGTGGTACTGGCACTGTAACTAATGTCACTCTCAGGCAACCAGCTTCACCGGGTGCAGTTGTGACCTTACATGGAAGATTTGAAATCTTATCCTTGTCTGGATCTTTCTTACCACCGCCTGCACCACCGGCGGCATCGGGATTGGCTATATATCTAGCTGGGGGGCAAGGTCAGGTAGTCGGAGGAAGCGTGGTCGGACCGTTATTGGCTTCCGGTCCTGTGGTTATCATGGCTGCTTCATTCGGTAATGCCGCCTATGAGAGGCTTCCATTGGATGAAGAAGAAGGATCTGTACCGGTTGGCGGAAATGGAGGCTTAGGTTCATCTGGAATGGTAGGACAGCAGCAGCAGCAGCAAAGCCAGCAGCAACAACAGCTATTACCCGATCCTAACACATCTCTCTTTCATGGTGTGCCACAAAATCTTCTCAGTTCATGTCAATTACCAGGTGAAGGTTACTGGGGTGGAACTGCAAGCCGCCCACCTTATTAG 936 0.4808 MDPITAHGRPLPPPFLTRDLHLHPHHQFQTHHHQSTPEDEQSGNGNLSHGIKRDHDDNATATTTTNTSTTTIDGKELVSYQGSGEGEIHRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEITNGCDIMESVSTFAKRRQRGVCILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLDEEEGSVPVGGNGGLGSSGMVGQQQQQQSQQQQQLLPDPNTSLFHGVPQNLLSSCQLPGEGYWGGTASRPPY* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00856 311 MobiDBLite consensus disorder prediction 26 108 - -
Pte4g00856 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 277 IPR014476 GO:0003680
Pte4g00856 311 FunFam AT-hook motif nuclear-localized protein 117 244 - -
Pte4g00856 311 PIRSF ESCAROLA 17 311 IPR014476 GO:0003680
Pte4g00856 311 MobiDBLite consensus disorder prediction 60 77 - -
Pte4g00856 311 MobiDBLite consensus disorder prediction 256 286 - -
Pte4g00856 311 CDD DUF296 118 185 IPR005175 -
Pte4g00856 311 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 230 IPR005175 -
Pte4g00856 311 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 243 - -
Pte4g00856 311 MobiDBLite consensus disorder prediction 242 286 - -
Pte4g00856 311 Gene3D - 117 246 - -
Pte4g00856 311 ProSiteProfiles PPC domain profile profile. 114 251 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00856 Pte-Chr4 39672780 39673715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00856 1 312 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 61.111 1.28e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00856 - - jre:108980480 395.201