Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00842 ATGGGGAGAGGAAGAGTTGAGCTGAAGAGGATTGAAAACAAAATCAACCGGCAAGTGACTTTCTCAAAGAGACGAAATGGTTTGCTCAAGAAGGCTTATGAACTCTCTGTACTTTGTGATGCTGAGGTTGCCCTTATCATCTTCTCTAGTCGTGGCAAGCTCTATGAATTTGGAAACGCTGGTATCTCTAAGACACTTGAACGATACCAGCGTTGCTCTTTCACTCCTCAAGACAACAGTGTTGAACGAGAAATTCAGAGCTGGCATCAGGAGGCAACAAGGCTGAAGGCAAAGTATGAGTCTCTCCAACGCACTCAGAGACATTTGCTTGGAGAAGATCTTGGACCACTTAGCGTTAAGGAGTTGCAGAATCTTGAGAAGCAGCTTGAAGGGGCTCTAGCACAAGCTAGGCAAAGAAAGACACAAATTATGATTGAACAAATGGAAGATCTTCGTAGAAAGGAACGTCAGCTTGGAGATCTCAATAAGCAGCTGAAAAGCAAGCTTGAGGCAGAGGGACAAACTTTCAAAGCCTTTGAAGACTTGTGGAATTCTAGTGCAGCACCTGGAAACAGCAGCTTTTCTCTGCATGCTCCTCAAAACAACCCTATGGAATACCACCCTGAACCTGTTTTGCAAATAGGGTACCATCATTATCCAAGTGGTGGTGAAGGATCTTCTGTAACAAAGAACATGGCTAGTGAGACCAATTTCATCCAGGGATGGGTACTCTAA 735 0.4435 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNAGISKTLERYQRCSFTPQDNSVEREIQSWHQEATRLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQARQRKTQIMIEQMEDLRRKERQLGDLNKQLKSKLEAEGQTFKAFEDLWNSSAAPGNSSFSLHAPQNNPMEYHPEPVLQIGYHHYPSGGEGSSVTKNMASETNFIQGWVL* 245
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00842 244 Coils Coil 85 105 - -
Pte4g00842 244 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pte4g00842 244 Coils Coil 144 171 - -
Pte4g00842 244 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Pte4g00842 244 FunFam MADS-box transcription factor 1 13 86 - -
Pte4g00842 244 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pte4g00842 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte4g00842 244 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte4g00842 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte4g00842 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte4g00842 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte4g00842 244 Coils Coil 119 142 - -
Pte4g00842 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Pte4g00842 244 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte4g00842 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte4g00842 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte4g00842 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte4g00842 Pte-Chr4 39521948 39528368 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00842 1 245 MADS-box Gene Family AT2G45650 67.984 1.35e-118 337
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte4g00842 K-box 9.5e-30 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00842 K09264 - rcu:8258483 412.149