Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00837 ATGGATAGCAATAATCATCAATATTATGAAGATGATGATGAAGTTCCACTTCCAGGTTTTCGTTTCCATCCAACAGATGAGGAGCTCGTCGGATTTTATCTTCGCAGGAAAATCGACAAGAAGCCCATCAGTATCGAACTTATCAAACTGATCGATATCTACAAATATGATCCTTGGGATCTTCCAAAACTCAGTAGTATTGTTGGGGAGAAGGAGTACTATTTCTTTTGTAGAAGAGGGAGAAAATATAAGAATAGCATAAGGCCGAATAGAGTCACTGGTTCAGGGTTTTGGAAAGCAACTGGCATAGACAAGCCTGTGTATTCCAATGGAGGAGAAGGCCAAGATTGCATTGGGTTGAAGAAAACATTAGTCTATTACCGTGGCAGTGCCGGAAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGCCTTCCATCTACGGACATCGATAGCCACCTGATCAAGAACAACAAGACTACTACTGCGAACATTCATCTCCAAGAGGCTGAAATCTTGACGCTCTGCCGAATTTTCAAGCGAAATTTGTCGCATAGAAAGAACCCAGGGGACTGGAAACAATTTTCAGCTAAGCGTTCCAATGACAAAAGCTCCAAGAGTGGTTACAGCACTGTGGATTCCAATGGTGAGGAAGCTTACATTAGTTTTGCAAATGGAGGCCAGCATGAATTTTATGAGAAGAAGCCTATAATTAACTATAGTGATCAGAGGAACCAGTTTTCTATATGTGATCATCAGTTGAGTACTCCATCACTGACAATGTCACAACCTCAATCAGCAGCTTCTTCAGCTTCGGGCATTTGCATGAATCAAAATGCAAGTGACTTCTTCGCATACAATAGCTGGGATGAGCTTGGCTCGGTTATGGAGTTTGCTCATGATCAATTTCAGTTTCCTGGTGATTTTTAG 933 0.418 MDSNNHQYYEDDDEVPLPGFRFHPTDEELVGFYLRRKIDKKPISIELIKLIDIYKYDPWDLPKLSSIVGEKEYYFFCRRGRKYKNSIRPNRVTGSGFWKATGIDKPVYSNGGEGQDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSTDIDSHLIKNNKTTTANIHLQEAEILTLCRIFKRNLSHRKNPGDWKQFSAKRSNDKSSKSGYSTVDSNGEEAYISFANGGQHEFYEKKPIINYSDQRNQFSICDHQLSTPSLTMSQPQSAASSASGICMNQNASDFFAYNSWDELGSVMEFAHDQFQFPGDF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00837 310 ProSiteProfiles NAC domain profile. 16 182 IPR003441 GO:0003677|GO:0006355
Pte4g00837 310 SUPERFAMILY NAC domain 16 181 IPR036093 GO:0003677|GO:0006355
Pte4g00837 310 FunFam NAC domain-containing protein 35 25 185 - -
Pte4g00837 310 Pfam No apical meristem (NAM) protein 18 146 IPR003441 GO:0003677|GO:0006355
Pte4g00837 310 Gene3D NAC domain 25 186 IPR036093 GO:0003677|GO:0006355
Pte4g00837 310 MobiDBLite consensus disorder prediction 191 212 - -
Pte4g00837 310 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00837 Pte-Chr4 39487108 39489026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00837 2 223 NAC Transcription Factor Family AT5G39820 52.137 3.76e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte4g00837 NAM 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00837 - - gmx:100790471 371.703