Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00833 ATGGCAGGAGCTGAAACCCCTAACTGTACTACTAAGTCTACTCCCACTGCGACTACTACCGTTGCCACAAACAATGGTACACCAACCCCACCTAACAAATCCATTATGCGTAGGTTTGTGGGGGTGAGGCAAAGGCCATCAGGAAGATGGGTGGCAGAGATCAAAGACTCTTCCCAACGTGTAAGGTTGTGGCTTGGAACATACGATACCCCAGAAGAAGCAGCTAGGGCTTATGATGAAGCAGCTCGTGCACTACGTGGTGAGAATGCTAGAACCAATTTCGCACAAGTGAACAACATCACTAACCAACTAGGTCCGATGAGTACTCCTCCTCATCTTGGTTCTGCTTCTGGTTCTGAAGGGAGGATAGGGCTAAGCTTCTCATCCTTGAAAGCCAAATTGAGCAAGAACCTTCAGAGCATCATGGCTAGGGCAAGTGACAGCAAGTCCTCAAAAAGCAGGGTCAGTGATCATTTCACTTTCGCAAGTATTTTCCACCGCAGGAGTTTCCAATACCAGTCTAGTCCTGTGGATATGAAGAACATTGAGAAAGTTGTTCAACCTAGTATCATTGTGCCGCCAATAGAAAGTGAGGCGGGCTCTTGGGAAAACTCTAGTATTTCTGACTGTAGCTCTGAGTGGGTGGGATTCAGACAAAGTGGTCTAGACTCTGATGGTTCAGATGTAGGGGAAACAGTTGGGGTTGGTGATCATCAAGCTGGGTACGTTGAACAAATGATGAGTTGGATTGATAGCCCTGAGATTTGCCCTAGTGAGGTTTCAAGGAGTAAGAGATTCAAGGTTTCTTCTTCAGTGATGGTGCCTCCAACTTTCAGTGGTTCCCCATATGATGGTTGTTGCTCTCCATGCAGTGGCTGCGGTTCTCCATATCATGGTTATGGCTCACCTTATAATTATAGGGAACACCATTGA 933 0.4673 MAGAETPNCTTKSTPTATTTVATNNGTPTPPNKSIMRRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAQVNNITNQLGPMSTPPHLGSASGSEGRIGLSFSSLKAKLSKNLQSIMARASDSKSSKSRVSDHFTFASIFHRRSFQYQSSPVDMKNIEKVVQPSIIVPPIESEAGSWENSSISDCSSEWVGFRQSGLDSDGSDVGETVGVGDHQAGYVEQMMSWIDSPEICPSEVSRSKRFKVSSSVMVPPTFSGSPYDGCCSPCSGCGSPYHGYGSPYNYREHH* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00833 310 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Pte4g00833 310 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Pte4g00833 310 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Pte4g00833 310 FunFam ethylene-responsive transcription factor RAP2-11 37 96 - -
Pte4g00833 310 CDD AP2 38 97 IPR001471 GO:0003700|GO:0006355
Pte4g00833 310 MobiDBLite consensus disorder prediction 1 32 - -
Pte4g00833 310 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 169 - -
Pte4g00833 310 MobiDBLite consensus disorder prediction 1 34 - -
Pte4g00833 310 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Pte4g00833 310 SUPERFAMILY DNA-binding domain 39 95 IPR016177 GO:0003677
Pte4g00833 310 Gene3D AP2/ERF domain 37 97 IPR036955 GO:0003700|GO:0006355
Pte4g00833 310 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00833 Pte-Chr4 39431551 39432483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00833 38 95 AP2-EREBP Transcription Factor Family AT5G19790 75.862 1.71e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte4g00833 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00833 K09286 - qsa:O6P43_017554 361.303