Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00825 ATGAGTTTTGGGGGTTTCCTTGACAGCAACACTGGTGGTGGCGGTGCTCAAACAGTAGCTGGTATATCTTACAGCGACAGTGACGACAACAACAACGGCATGCCTGCCGGTGCAATTTCACAGCCACACCTTGCCACTCCTACTATGGTCAAATCCATGTTCAACTCTCCTGGACTCTCACTTGCACTTCAAACGAATATAGATGGACAAGGCGATATGACTAGAATGGCGGAAAACTTTGAACATAGCATGGGGAGAAGAAGTAGAGAAGAAGAACATGAGAGCAGATCCGGAAGTGACAACGTTGATGGTGCTTCAGGTGATGATCAAGATTCTTCCGACAACCCACCGAGAAAAAAGCGTTATCATCGACATACTCCTCAACAAATCCAAGAGCTTGAAGCTCTATTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGATTGGAACTTAGCAAAAGGCTTTGCTTGGAAACAAGACAGGTCAAATTCTGGTTTCAAAATCGGAGAACCCAGATGAAGACTCAACTGGAGCGCCATGAGAACTCTTTGCTTAGAGCTGAGAATGATAAACTTAGAGCTGAAAACATGTCAATTAGAGATGCAATGAGGAATCCAATTTGCTCCAACTGTGGAGGTCCAGCTATAATTGGCGAGATTTCACTAGAGGAGCAGCATCTGAGAATTGAGAATGCAAGGTTGAAGGATGAGCTAGACCGCGTATGTGCACTGGCAGGCAAGTTTTTGGGTCGTCCAATTTCTTCACTGTCTAACTCAATTGCTCATTCATTGCCAAACTCTAGTTTGGAACTTGGAGTTGGGAGTAATGGCTTTGGTGCTATGGGTTCTGTAGCCTCAACTTTGCCTTTGGGGCCTGATTTTGGTATTGGAATTTCAAATGGTTTGCCTCTTGTCCCACCATCTAGACCGTCAGCTGGTGTGACTGGTCTTGATAGATCAATTGAAAGGTCTATGTTTCTAGAGCTTGCGTTGACAGCAACGGATGAATTGTTCAAAATGGCGCAGACTGATGAACCCCTTTGGATTAGGAGTCTAGATGGAATGTTCATTTTGAACCATGATGAATACATGAGAACTTTTACTCCATGTATTGGTCTGAAACCCAATGGTTTTGTTACTGAAGCGTCTAAAGAATCTGGTATGGTCATTATCAATAGCTTGGCTCTTGTCGAAACATTGATGGACTCGAATCGTTGGGCAGAGATGTTTCCTTGTATTATTGCCAGAACCTCTACAACTGATGTGATATCTAGTGGAATGGGTGGAACAAGAAATGGTGCACTTCAACTGATGCAAGCTGAACTTCAAGTTCTTTCCCCTTTGGTTCCTGTTCGCGAGGTCAATTTCCTAAGGTTCTGCAAGCAACACGCAGAGGGTGTATGGGCTGTTGTAGATGTGTCTATTGACACCATCCGGGAAACTTCTTCTGGTGCACCGACATATCTGAACTGCAGGAGGCTTCCTTCTGGCTGTGTTGTGCAAGATATGCCAAATGGTTACTCCAAAGTGACATGGGTTGAGCATGCAGAATATGATGAGAGCCAAGTACACCAACTATACCGGCCATTGTTAAGCTCAGGCATGGGGTTTGGTGCACAGCGTTGGGTGGCCACCCTTCAACGCCAATGTGAATGTCTAGCCATCTTAATGTCCTCTACCGTCCCTTCCCGTGACCACACAGCTATCACAGCGAGTGGGAGGCGAAGCATGCTGAAGCTAGCTCAACGAATGACAGACAACTTTTGTGCCGGAGTTTCTGCATCAACAGTACACAAATGGAACAAGCTGAACGCCGGTAATGTGGATGAGGATGTTCGTGTTATGACACGCAAGAGTATCGACGACCCTGGTGAGCCACCGGGGATTGTGTTAAGTGCAGCCACCTCTGTATGGCTACCTGTCTCTCCTCCTAGACTCTTCCATTTCTTGCGTGACGAGCGCCTCAGAAGCGAGTGGGATATACTCTCCAATGGTGGGCCAATGCAGGAAATGGCTCATATCGCCAAAGGCCAAGACCATGGCAACTGCGTCTCTCTCCTGCGTGCCAGCGCTATGAATGCAAACCAGAACAGTATGCTTATACTGCAAGAAACATGCATAGACTCAGCTGGCTCACTTGTGGTGTACGCTCCGGTGGACATACCAGCCATGCATGTGGTTATGAATGGTGGTGATTCTGCATACGTTGCCTTACTTCCTTCTGGATTTGCCATCGTCCCGGATGGACCAGCTTCACGTGCGGCTGTCAATGGTAACAAAGGTGGCAGCGGCAGCAATGGCAATAACAACGGTGATGGGTCTCTTCTTACCGTGGCATTTCAGATCCTAGTGAATAACCTCCCCACAGCTAAGCTCACCGTTGAGTCGGTGGAGACTGTGAACAATCTCATCTCGTGCACTGTTCAAAAAATCAAGGCTGCTCTTCGTTGTGAAAGCTGA 2460 0.4695 MSFGGFLDSNTGGGGAQTVAGISYSDSDDNNNGMPAGAISQPHLATPTMVKSMFNSPGLSLALQTNIDGQGDMTRMAENFEHSMGRRSREEEHESRSGSDNVDGASGDDQDSSDNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRAENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLSNSIAHSLPNSSLELGVGSNGFGAMGSVASTLPLGPDFGIGISNGLPLVPPSRPSAGVTGLDRSIERSMFLELALTATDELFKMAQTDEPLWIRSLDGMFILNHDEYMRTFTPCIGLKPNGFVTEASKESGMVIINSLALVETLMDSNRWAEMFPCIIARTSTTDVISSGMGGTRNGALQLMQAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSSGAPTYLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSTVPSRDHTAITASGRRSMLKLAQRMTDNFCAGVSASTVHKWNKLNAGNVDEDVRVMTRKSIDDPGEPPGIVLSAATSVWLPVSPPRLFHFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQNSMLILQETCIDSAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPASRAAVNGNKGGSGSNGNNNGDGSLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIKAALRCES* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00825 819 SUPERFAMILY Bet v1-like 579 812 - -
Pte4g00825 819 CDD START_ArGLABRA2_like 323 551 - -
Pte4g00825 819 MobiDBLite consensus disorder prediction 82 99 - -
Pte4g00825 819 MobiDBLite consensus disorder prediction 82 126 - -
Pte4g00825 819 FunFam Homeobox-leucine zipper protein HDG1 106 192 - -
Pte4g00825 819 Pfam START domain 328 552 IPR002913 GO:0008289
Pte4g00825 819 MobiDBLite consensus disorder prediction 20 40 - -
Pte4g00825 819 Coils Coil 170 197 - -
Pte4g00825 819 Pfam Homeodomain 119 174 IPR001356 GO:0003677
Pte4g00825 819 MobiDBLite consensus disorder prediction 20 37 - -
Pte4g00825 819 CDD homeodomain 118 176 IPR001356 GO:0003677
Pte4g00825 819 ProSiteProfiles 'Homeobox' domain profile. 116 176 IPR001356 GO:0003677
Pte4g00825 819 SMART HOX_1 117 180 IPR001356 GO:0003677
Pte4g00825 819 ProSitePatterns 'Homeobox' domain signature. 151 174 IPR017970 GO:0000981|GO:0006355
Pte4g00825 819 ProSiteProfiles START domain profile. 319 555 IPR002913 GO:0008289
Pte4g00825 819 SUPERFAMILY Bet v1-like 321 552 - -
Pte4g00825 819 Gene3D - 105 191 - -
Pte4g00825 819 SMART START_1 328 552 IPR002913 GO:0008289
Pte4g00825 819 FunFam Homeobox-leucine zipper protein GLABRA 2 328 551 - -
Pte4g00825 819 SUPERFAMILY Homeodomain-like 103 176 IPR009057 -
Pte4g00825 819 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 115 815 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00825 Pte-Chr4 39366380 39372295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00825 1 819 Homeobox Transcription Factor Family AT3G61150 65.707 0.0 1050
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte4g00825 START 1e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00825 K09338 - tcc:18614208 1399.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00825 4 39366380 39372295 Pte4g00825 4 39366380 39372295 RCT