Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00823 ATGCACAATTGTGATCAATCAATGGCTTCTTCTCAAGTTGAAGCTGGCGTAGATAGTGTCCCACTCCTGCACAATTACATAGCCGAAAACATTATTCGAAGCAGGCGGCTTGTTCGCCGTACACCACCGCATTTGAGCAGTGCTGCCAGGTTCTTGAGGCGGGCTAGTGGCCGACGGATGATGCTCAGGGAACCATCTGTGCGGGTACGTGAGAACGCTGCAGAGCAGCTGGAGGAGAGGCAGAGTAACTGGGCATATTCTACGCCCGTGATCGTGTTGGATATCTTGTGGAACTTGGCGATTGTTGGAGTTGGGAGTGCTGTGCTAGGTTTGAGTTTTCAGGAAAAACCTTCGGTGCCACTGAGGGTGTGGGTCATTGGGTATATTCTACAGTGTGTTTTTCATGTTGTGTATGTTATGGTGCAACATAGGCGGCGGCGTCAGGCAAGGTTGACGTTTGATCAGAATGCGCAGTGGGACAGTAGTGGCGATTCAAGTTTTGAAACGGTAAGCGATGGAGAGGATTATGGTATGCAGCAACTTCAGGATGATGAACCTATCAGTGTTGCCAAATACTTGGAATCTGCAAATACGATGGTTTCATTTATATGGTGGATTGTTGGATTCTACTGGGTAACTGCTGGTGGCCAAAATTTAACGCAAGTTGCCCCTCAGCTTTACTGGCTTTGCGTTACGTTTCTAGCTTTTGACATCATGGTTGTAGCAATCTGTGTTGCTGTGGCATGTCTCATTGGTATTGCTGTTTGCTGCTGCTTGCCATGCATAATCGCTCTATTGTATCTTGTGACAGACCAGCAAGGAGCAACAAAGGAACAGATAGAGAAACTACCAAAATTCAAGTTTCGCAGGCTAGATGAGTTTGAAAAAGCTGATGGTCAGACCCAAGAATCATCAAGAGGATTAATTACAGAATGTGATGCTGATGTGCCTTCCGAGCATGTTCTCTTACCGGAAGATGCTGAGTGTAGCATCTGCCTTTCTGCATATGATGATGGAAGCGAGCTGAGAGAACTTCCTTGTCACCACCATTTTCACTGTACATGCATAGACAAGTGGCTTCATATCAATGCGATCTGTCCTCTCTGCAAATATAATATTTTGAAGCCTGGAAGCCTTCAGGAAGAAGTATAG 1152 0.4618 MHNCDQSMASSQVEAGVDSVPLLHNYIAENIIRSRRLVRRTPPHLSSAARFLRRASGRRMMLREPSVRVRENAAEQLEERQSNWAYSTPVIVLDILWNLAIVGVGSAVLGLSFQEKPSVPLRVWVIGYILQCVFHVVYVMVQHRRRRQARLTFDQNAQWDSSGDSSFETVSDGEDYGMQQLQDDEPISVAKYLESANTMVSFIWWIVGFYWVTAGGQNLTQVAPQLYWLCVTFLAFDIMVVAICVAVACLIGIAVCCCLPCIIALLYLVTDQQGATKEQIEKLPKFKFRRLDEFEKADGQTQESSRGLITECDADVPSEHVLLPEDAECSICLSAYDDGSELRELPCHHHFHCTCIDKWLHINAICPLCKYNILKPGSLQEEV* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00823 383 PANTHER TARGET OF ERK KINASE MPK-1 55 376 - -
Pte4g00823 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 375 IPR013083 -
Pte4g00823 383 SUPERFAMILY RING/U-box 319 376 - -
Pte4g00823 383 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Pte4g00823 383 SMART ring_2 329 369 IPR001841 -
Pte4g00823 383 Pfam Ring finger domain 328 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00823 Pte-Chr4 39332734 39336613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00823 8 381 C3H Transcription Factor Family AT1G68070 47.090 1.20e-110 326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00823 4 39332734 39336613 Pte4g00823 4 39332734 39336613 RCT