Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte4g00818 | ATGGCATTCACAGGAACTCTTGACAAATGCAAGGCTTGTGACAAGACAGTCTATGTTGTTGACATGCTGTCTCTTGAAGGAGTTCCTTACCACAAGACCTGCTTCAAGTGCACCCACTGCAAAGGAAATCTTACAATGAACAGCTACTCCTCCATGGATGGAGTCCTCTATTGTAGACCACACTTCGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAAAATTTCCAGTCGATCCCAAGCAGACTCTCTTCCATGTTCAGTGGAACTCAAGACAAATGTTCAGTTTGCTCAAAAACAGTCTATCCACTGGAGAAGGTGACTCTGGAAGGAGAGTGCTACCACAAGAACTGCTTCAGGTGTGCTCATGCAGGTTGTCCTCTTACACATTCTTCCTATGCTGCTCTTGATGGTGTCCTCTACTGCAAGCACCATTTTGCACAACTATTCATGGAGAAAGGAAACTTCAGTCATGTACTCAAGGCAGCTGCCAGTAGGAAGAATGCTACACCACCTCCAGAACCAGCAGAGCCAGAGGCAGCAGAAGGTGAACAACAGCCCCAGACTGAAGAGCAACCTACGCAAGAGGAATCTTAA | 597 | 0.4623 | MAFTGTLDKCKACDKTVYVVDMLSLEGVPYHKTCFKCTHCKGNLTMNSYSSMDGVLYCRPHFEQLFKESGNFSKNFQSIPSRLSSMFSGTQDKCSVCSKTVYPLEKVTLEGECYHKNCFRCAHAGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNFSHVLKAAASRKNATPPPEPAEPEAAEGEQQPQTEEQPTQEES* | 199 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte4g00818 | 198 | Gene3D | Cysteine Rich Protein | 88 | 158 | - | - | |
| Pte4g00818 | 198 | MobiDBLite | consensus disorder prediction | 162 | 198 | - | - | |
| Pte4g00818 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Pte4g00818 | 198 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Pte4g00818 | 198 | SMART | lim_4 | 93 | 145 | IPR001781 | - | |
| Pte4g00818 | 198 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Pte4g00818 | 198 | ProSiteProfiles | LIM domain profile. | 92 | 152 | IPR001781 | - | |
| Pte4g00818 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 120 | 159 | - | - | |
| Pte4g00818 | 198 | PANTHER | OS06G0237300 PROTEIN | 6 | 77 | - | - | |
| Pte4g00818 | 198 | Pfam | LIM domain | 94 | 149 | IPR001781 | - | |
| Pte4g00818 | 198 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Pte4g00818 | 198 | FunFam | LIM domain and actin-binding 1 | 88 | 158 | - | - | |
| Pte4g00818 | 198 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Pte4g00818 | 198 | Gene3D | Cysteine Rich Protein | 5 | 72 | - | - | |
| Pte4g00818 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 86 | 119 | - | - | |
| Pte4g00818 | 198 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Pte4g00818 | 198 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Pte4g00818 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 2 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte4g00818 | Pte-Chr4 | 39297475 | 39299247 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Pte4g00818 | LIM | 7.8e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte4g00818 | - | - | qsa:O6P43_027214 | 327.02 |