Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00798 ATGTCTTCTACTGCTGCTCTCTCAGAATCCTCCTCCAGACACTACACCTATAGCCGAAAGCAAAAATCCCTTGGCCTTTTGTGCACCAATTTCTTGAGCTTGTACGACCGGGAAGGCGTCCACTCGATTGGCCTCGATGATGCCGCTGCTCGATTAGGTGTTGAAAGGCGACGGATCTATGATATTGTCAACGTCCTGGAGAGCGTCGGAGTGCTGGCTCGGAAAGCCAAGAATCAGTATACCTGGAAAGGGTTTCGGGCGATTCCTGAGGCTTTAGAAGAGCTTAAAGAGGAGGGCATGAAGGAGAACTGTTGTGTGTTCGACGGCGGCAATGAGAATGCAAAGCTTTCCGATGATGAGGAAGACGACGAAACCTTATCAATTCCTAGTCAAGGAAGTCAGAGTGAAAAGCAGATCCCTGGTCCTCCCGCCGCTAAATCTTTCAAATCTGATAACCGGAGGGAAAAGTCACTTGCACTTCTTACTCAGAACTTTGTCAAGCTCTTCGTCTGCTCTAATGTAGACGTGATTTCTCTTGATGAAGCTGCAAAGTTGCTGCTTGGAGATGCCCACAATTTATCCATCATGAGAACGAAAGTTAGACGTTTATATGACATTGCTAATGTGTTGTCCTCGATGAATCTGATTGAAAAGACTCATACACCAGACTCCAGGAAGCCGGCATTCAGGTGGCTAGGCTTAAATACAAAGCCAGGAAGTGAGCCTGTTATCAATTCTAATCTCAGGGAGCCCCGGAAAAGAATGTTCGGAACTGATGTCACTAATATCAGTTTTAAGAGGAACAAAGTTGATCCATTTGTTGATAGAGAGTTGAGCATGAAGAAACGGAATGAGAGGGAAAGTGAGAGCTATCTTCAACCTGACAAAAACAATTTAAAGCAAGAGACAGAACAATGTTTAAAGGGCTACGAGTTTGGTCCTTTTGCTCCAGTTTCAGCCCCTGAAGTTAGTGCATCCGAGAACAAAACCACGAAGCAGGTACATGATTGGAACAAGTTAACAGCTGCTTATCGCCCTCAGTATCAGAACAAAGGTAAACTTCCATGCCCTTTGGGGTGGCTTAACAAAGACGAAGTTGAGGAAAGTTTCAATCTGTATTTATCGTGTTCTCATTTTTGCTCCGTACTTGTTGAATGGTCGTCATCCTTTTTAAGTCACTGCAATCAAAAGTTAATATTAGGAAACAGTTTGTATATGGATGTGTATACATTTCGGTTTTGTGGACTGTTTTCTTTGTTGCCCTAA 1266 0.4392 MSSTAALSESSSRHYTYSRKQKSLGLLCTNFLSLYDREGVHSIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFRAIPEALEELKEEGMKENCCVFDGGNENAKLSDDEEDDETLSIPSQGSQSEKQIPGPPAAKSFKSDNRREKSLALLTQNFVKLFVCSNVDVISLDEAAKLLLGDAHNLSIMRTKVRRLYDIANVLSSMNLIEKTHTPDSRKPAFRWLGLNTKPGSEPVINSNLREPRKRMFGTDVTNISFKRNKVDPFVDRELSMKKRNERESESYLQPDKNNLKQETEQCLKGYEFGPFAPVSAPEVSASENKTTKQVHDWNKLTAAYRPQYQNKGKLPCPLGWLNKDEVEESFNLYLSCSHFCSVLVEWSSSFLSHCNQKLILGNSLYMDVYTFRFCGLFSLLP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00798 421 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Pte4g00798 421 MobiDBLite consensus disorder prediction 114 151 - -
Pte4g00798 421 FunFam E2F transcription factor-like E2FE 148 235 - -
Pte4g00798 421 PANTHER TRANSCRIPTION FACTOR E2F 9 349 IPR015633 GO:0000978|GO:0006357
Pte4g00798 421 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Pte4g00798 421 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Pte4g00798 421 FunFam E2F transcription factor 8 14 86 - -
Pte4g00798 421 Gene3D - 14 86 IPR036388 -
Pte4g00798 421 Gene3D - 148 235 IPR036388 -
Pte4g00798 421 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
Pte4g00798 421 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Pte4g00798 421 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00798 Pte-Chr4 39020029 39023431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00798 14 351 E2F-DP Transcription Factor Family AT3G48160 59.195 2.16e-122 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pte4g00798 E2F_TDP 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00798 K09391 - qsa:O6P43_030916 480.715