Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00782 ATGGATGTGGATGATTTTCGGTCGATATTAGAGACAGCAGGGGTGGATGTGTGGCTGTTCATTGACGCGGCAATCACCGTTGCGTCGTTGGATTACGGGGAAGAATTGAAGCATCGGCGAGACGGGATTGTAGAACGCGTTTACGCTGCAACTTTAGATTCTAACCGGTGTCGAAACTGCGATGCCAATCTGGGTGTACCAAATGGAGGTGAAATCAACGCTCCCATCAAGAAAGGCCATAGTCCGGTATTGCTACCAGCTCCCGCGCCCAAAAGAGGTGTTTCGCCTCCGACCCCACGATCGTCAGGTGAAAATGACGAGGAAGACAACGATTTAGATCCGTACGGTGGTTTGTTTGACGATGAACAGAAGAAGATCTTAGAGATAAAAGAACAACTTGAAGTGCCTCATCAGTCTGAAGACACTTTGGTAGAATTGCTACAAAGTCTGGCGGATATGGATATTACATTTCAGGCACTCAAGGAAACTGATATAGGGAGGCACGTTAATCGATTCAGAAAGCATTCATCCAATGATGTCCGAAGATTGGTGAAGTTACTTGTCAGGAAATGGAAGGATAAAGTTGATGAATGGGTGAAGAATCAACCTGGTGACCAAGGTTCTTCCGACCTCATGGATAATGGAGATTCACCAGAACTGAGAACTATCCAGAATGGGAATCACCAGGTTCCAGATTTTGCAAATTCTCCAAATCCTCGTACTGGGAGTTCTGGCTCAGACAAAAACAGTTCAGATCCGGAACCAAAACCAAAGGCAATCCCTCGAAAAGAAGCTCCACCAAAACGAGGCCCATCACATGCTGCTTCTCCTAACCCTCCTCCTCAAAATAGACAGAGAGAACAGAGAGACAGCAATATGGAGGCGGAGAGACTTGCTTCAGCTAGAAGGCGGCTTCAAGAAAGTTACAAGGAAGCTGACAATGCGAAGAAGCAAAGAACAATTCAGGTGATGGATATTCATGACATACCAAAACCCAAGAATGCCTTCTTTGCCAAGAACAAGGGCAGTGGTAGTGGTTCTCATGGAAGACACTGA 1056 0.4621 MDVDDFRSILETAGVDVWLFIDAAITVASLDYGEELKHRRDGIVERVYAATLDSNRCRNCDANLGVPNGGEINAPIKKGHSPVLLPAPAPKRGVSPPTPRSSGENDEEDNDLDPYGGLFDDEQKKILEIKEQLEVPHQSEDTLVELLQSLADMDITFQALKETDIGRHVNRFRKHSSNDVRRLVKLLVRKWKDKVDEWVKNQPGDQGSSDLMDNGDSPELRTIQNGNHQVPDFANSPNPRTGSSGSDKNSSDPEPKPKAIPRKEAPPKRGPSHAASPNPPPQNRQREQRDSNMEAERLASARRRLQESYKEADNAKKQRTIQVMDIHDIPKPKNAFFAKNKGSGSGSHGRH* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00782 351 Coils Coil 295 318 - -
Pte4g00782 351 MobiDBLite consensus disorder prediction 287 326 - -
Pte4g00782 351 MobiDBLite consensus disorder prediction 202 250 - -
Pte4g00782 351 MobiDBLite consensus disorder prediction 199 351 - -
Pte4g00782 351 Pfam TFIIS helical bundle-like domain 146 195 IPR017923 -
Pte4g00782 351 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 209 IPR035441 -
Pte4g00782 351 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 208 IPR035441 -
Pte4g00782 351 ProSiteProfiles TFIIS N-terminal domain profile. 121 198 IPR017923 -
Pte4g00782 351 MobiDBLite consensus disorder prediction 251 269 - -
Pte4g00782 351 SMART TFS2_5 126 197 IPR003617 GO:0005634
Pte4g00782 351 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 350 IPR044790 -
Pte4g00782 351 MobiDBLite consensus disorder prediction 73 117 - -
Pte4g00782 351 CDD TFIIS_I 123 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00782 Pte-Chr4 38839360 38842582 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pte4g00782 Med26 7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00782 - - aip:107622503 447.973