Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00776 ATGAGGCCAGCACCCACAGTTGCATCTGTTCAATCCTTCCTACACTTGACTCCATCGGAGCTATCTTCTTCAACACCAATGTCAGAACGTAACTATACTCATAATTCGAGGCTGAGGAATTACAGTACTTCTCGTAGTTCTGAAGCAAATTTAGCCTTAGTTATTATCCTTCTCTTGTGTGCACTAGTCTGTGCTCTAGCTCTTAACACCGCCATTCGATGCTTCTTACGTGGTTGCAGTATAAGATTTAGTTCTTCGCAAAGCACACGAAATCAGCAGCAGCAAAAGACAAGTCGTCCAGAGGTTGATGCTGCTGATGTGGTTAAAGCTGCAGCTACTCCAATGGTGTTTTCAGCTGGGACAGAAGCTGAGTGTGCCATTTGTTTATCTGAATTTGTAGAGGGCGAGGAAATCCAGGTTCTGAAAAAGTGCAAACATAGTTTTCACTTGGAATGTATTGAAAAGTGGTTGTGTACAAAGTCCTCATGCCCCACTTGTCGTTGCAGCTTGAAATCTCCATAG 522 0.4349 MRPAPTVASVQSFLHLTPSELSSSTPMSERNYTHNSRLRNYSTSRSSEANLALVIILLLCALVCALALNTAIRCFLRGCSIRFSSSQSTRNQQQQKTSRPEVDAADVVKAAATPMVFSAGTEAECAICLSEFVEGEEIQVLKKCKHSFHLECIEKWLCTKSSCPTCRCSLKSP* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00776 173 SUPERFAMILY RING/U-box 124 171 - -
Pte4g00776 173 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Pte4g00776 173 Pfam Ring finger domain 124 167 IPR001841 -
Pte4g00776 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 173 IPR013083 -
Pte4g00776 173 SMART ring_2 125 166 IPR001841 -
Pte4g00776 173 PANTHER RING-H2 FINGER PROTEIN ATL78 24 170 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00776 Pte-Chr4 38777865 38778957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00776 33 172 C3H Transcription Factor Family AT5G47610 45.517 1.70e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00776 - K19040 tcc:18605908 141.739