Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00720 ATGAGTCGTAGGGTAAGAAGGAAAGTGTGTAGGAGAGGGAAAGAGAAGGTGGTTTTGCCTTGTTACCCTGAAATTCAAGATGAGGATTTGGATACGGGTCGGAGAGATGTTGTTGATTGGACCCAGTTGCCCGATGATACAGTCATTCAGATTTTCACTTGTCTGACTTACCGTGACCGGGCAAGCTTGGCATCAACTTGTCGGACATGGAGACTTCTTGGAAGTTCTCCATGTTTATGGACATCTCTAGATCTTCGCGCTCATCGATGTGATTCAGTAATGGCAGCTTCACTTGCTCCAAGGTGTGCCAATCTTCAGAAGCTTAGATTTCGTGGGGCTGAGTCTGCGGATGCAGTAATACATCTAAAAGCAAGAAACTTGAATGAAATAACTGGTGATTACTGCAGGAAAATTTGTGATGCTACTCTTTCAGTAATTGTTGCTCGGCATGAGGCACTTGAGAGTATTCAGCTTGGGCCAGATTTTTGTGAGCGAATCAGTAGTGATGCTATAAAAGCAATAGCTCATTGCTGCCCAAGATTGCAGAAACTTCGACTGTCAGGAATTAGGGATGTTAATGCTGATGCCATCAATGCTCTAGCGAAGCATTGCCCAAAGTTAACTGATATTGGGTTCGTTGATTGTTTGAGAGTTGATGAGAGGGCATTGGGCAATGTGGTATCAGTTCGTTTTCTTTCAGTTGCTGGGACTTCAGACATTAAATGGGATGTGGCTCCCCCTTTGTGGCAAAAGCTTCCCTTTCTGACAGGGTTGGACGTGTCGAGAACAGACATAAGCACTGCAGCTCTTTCAATGTTGATGTTATCACCTAGCTTGGAGGTTGTGTGTGCTCTAAATTGCACTTCCCTTGGAGAAGTTACAAACTTTTCTGCAAGTAAATACAAAAACAAGTTATTACTTACCATTTATACAGACATACTTAAAGGATTAGCTTCTCATTTTTTTGGTAATATGAAGAAAGGGAAGAATTTATTTTTGGAATGGAGGAACATGAAAAACAAGGCCATGAACTTCGATGACATTATGACTTGGCTCGAGTGGATCTTGTCCCACACACTTCTACGGTCGGCTGAGAGCACACAACAAGGTCTGGAGAATTTCTGGATCAAACAGGGTGGAACTTTGTTGCTTAGTTTAATGCACAGCTCAGAAGAGGATGTTCAAGAAAGGGCAGCAACGGGACTTGCAACTTTTGTTGTCATTGATGATGAAAATGCTAGCATAGACTGTAATAGAGCTGAAGCAGTTATGCAAGATGGTGGTATACGCCTCCTACTGGATTTGGCAAAATCTTGGCGGGAAGGGCTTCAGTCAGAGGCTGCTAAGGCCATAGCAAATTTATCTGTTAATGCAAATGTTGCTAAAGCTGTCGCGGAAGAGGGAGGAATCAATATCCTTGCCGGTTTAGCTAGGTCCATGAACAAGCTTGTGGCTGAAGAGGCTGCTGGAGGACTGTGGAATCTTTCTGTTGGGGAAGAACACAAGGGTGCCATTGCCGAGGCTGGGGCAATCAAGGCTTTGGTTGATCTTATTTTCAAGTGGTCCCATGGGGGCGAAGGAGTTTTGGAACGTGCAGCTGGTGCATTGGCTAACTTGGCAGCTGATGACAAGTGTAGCATAGAAGTTGCAGCAGAAGGTGGTATACGTGCTTTGGTGATGCTTGCTCGCAAATGTAAATTCGATGGAGTCCTTGAGCAGGCTGCTCGTGCATTGGCAAATTTGGCTGCTCATGGAGACAGTAATAGTAACAATGCTGCTGTAGGGCAAGAGGAAGGTGCTCTTGAGGCTCTCGTTCAGCTGACTCATTTGCCACACGAGGGGGTCAGGCAAGAAGCTGCTGGAGCACTTTGGAATTTGTCGTTTGACGATAGAAATCGAGAAGCAATTGCTGCAGCTGGTGGTGTTGACGCCCTGGTAGCTCTAGCCCAGTCATGTACTAATGCCTCCTCTGGACTTCAAGAGAGGGCTGCAGGTGCTCTCTGGGGATTATCAGTGTCTGAAGTCAATAGTATTGCTATTGGAAGAGAAGGAGGTGTTGCACCTCTGATTGCTCTGGCACGTTCAAATACTGAGGATGTCCACGAAACTGCTGCTGGAGCTCTCTGGAACCTTGCATTCAATCCTGGTAATGCTCTTAGGATAGTAGAGGAAGGGGGGGTTTCTGTGTTGGTTGATTTGTGTTCTTCATCAGTATCCAAGATGGCACGTTTTATGTCAGCATTGGCATTGGCTTACATGTTTGATGGAAGAATGGATGAATATGCATCAATAGGCAGTTCATCTGAAAACATTTCCAAGAGTGTTAACTTGGATGGAACTAGACGACTGGCCTTGAAGCAGATTGAGGCGTTTGTCCTAATGTTCTCTGATCCACTAGTATTTGCTATAGCTGCTGCATCATCAGCCCCTGCAGCATTGACTCAAGCAACTGAAGGTTCTCGTATCCAAGAAGCAGGACATCTCCGATGCAGTGGTGCTGAAATAGGAAGATTTGTTGCCATGCTACGAAACCCTTCTCCGACACTCAAAGCTTGTGCTGCATTTGCTCTTCTCCAGTTTACCGTTCCTGGAGGACGGCATGCTGTGCACCATGCAGGGCTAATGCAGAATGCTGGAGCAGCAAGGGTTCTCCGAGCAGCAGCTGCAGCAGCAAACGCCCCCCTTGCTGCCAAGATCTTTGCAAGAATTGTTCTTCGCAATCTTGAGCATCACCAGACAGAACAAAAAGTCTAA 2754 0.4582 MSRRVRRKVCRRGKEKVVLPCYPEIQDEDLDTGRRDVVDWTQLPDDTVIQIFTCLTYRDRASLASTCRTWRLLGSSPCLWTSLDLRAHRCDSVMAASLAPRCANLQKLRFRGAESADAVIHLKARNLNEITGDYCRKICDATLSVIVARHEALESIQLGPDFCERISSDAIKAIAHCCPRLQKLRLSGIRDVNADAINALAKHCPKLTDIGFVDCLRVDERALGNVVSVRFLSVAGTSDIKWDVAPPLWQKLPFLTGLDVSRTDISTAALSMLMLSPSLEVVCALNCTSLGEVTNFSASKYKNKLLLTIYTDILKGLASHFFGNMKKGKNLFLEWRNMKNKAMNFDDIMTWLEWILSHTLLRSAESTQQGLENFWIKQGGTLLLSLMHSSEEDVQERAATGLATFVVIDDENASIDCNRAEAVMQDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGINILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGAIKALVDLIFKWSHGGEGVLERAAGALANLAADDKCSIEVAAEGGIRALVMLARKCKFDGVLEQAARALANLAAHGDSNSNNAAVGQEEGALEALVQLTHLPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVDALVALAQSCTNASSGLQERAAGALWGLSVSEVNSIAIGREGGVAPLIALARSNTEDVHETAAGALWNLAFNPGNALRIVEEGGVSVLVDLCSSSVSKMARFMSALALAYMFDGRMDEYASIGSSSENISKSVNLDGTRRLALKQIEAFVLMFSDPLVFAIAAASSAPAALTQATEGSRIQEAGHLRCSGAEIGRFVAMLRNPSPTLKACAAFALLQFTVPGGRHAVHHAGLMQNAGAARVLRAAAAAANAPLAAKIFARIVLRNLEHHQTEQKV* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00720 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 726 IPR000225 GO:0005515
Pte4g00720 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 640 685 IPR000225 GO:0005515
Pte4g00720 917 Gene3D - 375 521 IPR011989 -
Pte4g00720 917 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Pte4g00720 917 SMART arm_5 416 456 IPR000225 GO:0005515
Pte4g00720 917 SMART arm_5 673 713 IPR000225 GO:0005515
Pte4g00720 917 SMART arm_5 542 583 IPR000225 GO:0005515
Pte4g00720 917 SMART arm_5 629 672 IPR000225 GO:0005515
Pte4g00720 917 SMART arm_5 588 628 IPR000225 GO:0005515
Pte4g00720 917 SMART arm_5 498 541 IPR000225 GO:0005515
Pte4g00720 917 SMART arm_5 457 497 IPR000225 GO:0005515
Pte4g00720 917 SMART arm_5 714 755 IPR000225 GO:0005515
Pte4g00720 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Pte4g00720 917 PANTHER PROTEIN ARABIDILLO 1 1 914 - -
Pte4g00720 917 Pfam Armadillo/beta-catenin-like repeat 462 496 IPR000225 GO:0005515
Pte4g00720 917 Pfam Armadillo/beta-catenin-like repeat 629 671 IPR000225 GO:0005515
Pte4g00720 917 Pfam Armadillo/beta-catenin-like repeat 675 712 IPR000225 GO:0005515
Pte4g00720 917 Pfam Armadillo/beta-catenin-like repeat 543 583 IPR000225 GO:0005515
Pte4g00720 917 Pfam Armadillo/beta-catenin-like repeat 499 541 IPR000225 GO:0005515
Pte4g00720 917 Pfam Armadillo/beta-catenin-like repeat 421 455 IPR000225 GO:0005515
Pte4g00720 917 Pfam Armadillo/beta-catenin-like repeat 592 627 IPR000225 GO:0005515
Pte4g00720 917 Gene3D - 522 588 IPR011989 -
Pte4g00720 917 SMART fbox_2 43 83 IPR001810 GO:0005515
Pte4g00720 917 Gene3D - 678 761 IPR011989 -
Pte4g00720 917 Gene3D - 589 677 IPR011989 -
Pte4g00720 917 Gene3D Ribonuclease Inhibitor 34 311 IPR032675 -
Pte4g00720 917 SUPERFAMILY RNI-like 66 294 - -
Pte4g00720 917 SUPERFAMILY F-box domain 40 80 IPR036047 GO:0005515
Pte4g00720 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 510 IPR000225 GO:0005515
Pte4g00720 917 FunFam Protein ARABIDILLO 2 354 501 - -
Pte4g00720 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 584 IPR000225 GO:0005515
Pte4g00720 917 Pfam F-box-like 40 86 IPR001810 GO:0005515
Pte4g00720 917 CDD F-box_AtADLO1-like 39 80 - -
Pte4g00720 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 509 554 IPR000225 GO:0005515
Pte4g00720 917 SUPERFAMILY ARM repeat 375 744 IPR016024 -
Pte4g00720 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00720 Pte-Chr4 38033775 38046112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00720 521 757 U-box Gene Family AT2G23140 32.353 6.43e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00720 - - qsa:O6P43_017291 1380.16