Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00673 ATGGAAAAATCTCTCTCTCCTAAAGGAAAGGGGATTGGGTACTGTTTGGAATCTCCTAGACCGCAGCACGAGGCATTCGCACCCTTTGATGTAGGAACGAGGAGCTCCATCTCAGAAGACATGCTTAGCAACATTACAGAACTTATGAATTTTGATAGTTATACGGTTTGGTGTGATAGCCCATCCTCTGCTGACCATGTTTTCGGTAATGGGCTCCGAACATGTTCAGTGATGCCACATACTACCTCCAATGCCTTCAATTTGGCAGAGCACGGTAGTGGAGGATTCCCTGTTTCTGAAGGAAATAGAAGTTGCCACACCGTTGAAAGTTCAGTCGATTTTCAGCAAATGGATTCCCTAGGAGAGTTCTCAATTGATGCTGATGAAATGGACGAAGAACAAGGTGATGACTTTTCACGGAAAAATGGCAATTTAAATAGGAATGGTGGTATGATCCCTAGATCGCTGGGGTGGTCACTTGATGAAAGAATGTTAAAGGCTTTGTCCTTGTTTAAAGACTCAGCGGGTGGCGGCATTTTAGCTCAAGTCTGGGTACCTATGAAACATGGAGATCATCACATCTTAACCACAAGTGAGCAACCTTATTTATTAGATCAGGTGCTTGCTGGATTTCGTGAAGTCTCTAGGGCATTTACATTCTCAGCCGAAGAAAAACTAGGCTCTGTCCTAGGTCTTCCTGGCCGTGTTTTTATTTCCAAGGTTCCTGAGTGGACTTCCGAGGTAGGCTATTACCACAAGGCTGAGTATTTGAGGGTAGAGCATGCAATCAATCACCAAGTTCATGGATCTATTGCTATCCCCGTAGTTGAAGCTCACCAGGGCAAATCATGCTGTGCTGTGCTTGAACTTGTCACTACTAAACAAAAACCAAACTTTGATGGGGAGTTGCAATTGGTATGCTCTGCGCTGAAGGCGGTGAATCTCCAAACAACTGCAACTCCCAGACTTCTTCCAGAGTGTCTCTCAGACAATCAAAAAGCGGCATTAGCAGAAATAAGTAATGTCTTGAGAGCCGTGTGTCATTCAAATAGATTGCCACTGGCACTGACATGGATTCCTTGTTACTACAACGAGGAAGCTCCTAACAAGATCGCAAAAGTAGGAATTCGAGGGGGTCAAACAAGTGATAGTGATAAATCTATACTATGCATTGACAAACCTGCTTGTTATGTGAACGATAGTGCTGTGAAAGGATTTATTCACGCATGTGGAGAACATCATCTTAAAGAAGGACAGGGTGTGGTTGGGAAAGCTCTTCAGTCAAATCATCCTTTCTTCTGTCCGAATGTGAAAACATATGATATAGCTGAGTATCCACTTGTCCTCCATGCACGCAAATACGGCCTGAATGCTGCAGTTGCAATCAGACTGAGGAGTACGTATACAGACAACGATGATTACATATTGGAGTTTTTCTTGCCTATCAATATGACAGAAAGTGCACAACAGGAATTATTGTTGGACAGCCTTTCATGTACCATGCGGAGGGTTTGCAGAAGTTTAAGAACAGTAACAGATGTTGAATTAGCTGGAGTAGAAGGAGAACGAATTATGTGGTTTCAGGAGGAAGAAAACCCTAGAATCCTTTCTATGTCTGAGGAAAACGGTCATACTAAACTGTCTGAGGGTGACTGTACAACAGTTTCAGAGATACCCATGAATCTATTGAGTAGCAGGAAAATTTGGAATGAAGCTGAATACTCGTATGGCCAGGGGATCAGTGGAGAAAGAAGGCAGTTGGAGAAAAGAAGAAGTACTACAGAGAAGAATGTCAGTTTAAGTGTTCTCCAGCAATATTTTTCTGGCAGCCTTAAGGATGCTGCTAAAAGCCTTGGTGTTTGCCCCACAACACTAAAAAGGATATGCAGACAACATGGCATTTCAAGGTGGCCCTCTCGAAAGATAAACAAAGTCAACCGATCATTAAAGAAGATTCAAACCGTGCTGGACTCTGTTCAGGGAGTTGATGGAGGGTTGAAGTTTGATCCTGTCATTGGTGGTTTGGTCGCTGCAGGATCTGCTTTTCTAGAACCTAATGAACAGAAAAGGAATCTTCAGATGCAAAATTCAGATCCAGTTTCCCGTGGTAAACAGATTGGCATTAATTTGGAAGAGAATGACTTTTGTATGGAAAGAAATGAGTTTAGGAGATCAAGGAATGAGGGCATCTTAAATACTCGTGATATTTCTGCAGTTGACTACAGAGAAAATTCTAAAACAATGAGTGTAGATGATGCGAAACACAAGAAAATGAATCATGTCACAAGTTTCAGGGCCTTTTCTCCAAATCTAGCCTTGGATTTTTGCCTTGCAAAAAAGGAAGGTGAAAATTTTGGTGTGAACCAGAGTGAATTGAGATGTGACAGTTCTGGCCGCCACTTGGTCGCTCAGAGTTCAAGCTTTTTGAATGGATTTGATGAAATGGAGATGGGGCTGGGTAGGAGCGATGTTATGATCGAACATAACCAGCAAACCTTTTCAAACATGACTGAAACATCAAATGAATCTCGTACCACAGTGCATGGCTATTCTTCAAGCTCTGAGAGCTTCCAGGAGCCGAAGTCTTCAAAACCAAATGCATACTGTGTTGACAGCGGGTCCAAGATTATAGTGAAAGCCACTTACAAAGATGATACCATGCGTTTCAAGTTTGAGCCTTCTGCTGGTTGTTTCCAACTGTATGAAGAGCTTGCTAAAAGATTCAAGCTACAAACAGGTACGTTCCAGCTCAAATATTTAGATGATGAAGCTGAATGGGTTATGCTAGTGAATGACTCTGATTTGCAAGAATGTATAGAAATAATGGATGATGCTGGCACACACTCGGCGAAGTTCCTCGTTCTTGATGTGCCATTTTCTTTGAGTAGTTCTGGTAGCAGTAGTTGCTTCTTGGCAGGGAGTTTATAG 2928 0.4245 MEKSLSPKGKGIGYCLESPRPQHEAFAPFDVGTRSSISEDMLSNITELMNFDSYTVWCDSPSSADHVFGNGLRTCSVMPHTTSNAFNLAEHGSGGFPVSEGNRSCHTVESSVDFQQMDSLGEFSIDADEMDEEQGDDFSRKNGNLNRNGGMIPRSLGWSLDERMLKALSLFKDSAGGGILAQVWVPMKHGDHHILTTSEQPYLLDQVLAGFREVSRAFTFSAEEKLGSVLGLPGRVFISKVPEWTSEVGYYHKAEYLRVEHAINHQVHGSIAIPVVEAHQGKSCCAVLELVTTKQKPNFDGELQLVCSALKAVNLQTTATPRLLPECLSDNQKAALAEISNVLRAVCHSNRLPLALTWIPCYYNEEAPNKIAKVGIRGGQTSDSDKSILCIDKPACYVNDSAVKGFIHACGEHHLKEGQGVVGKALQSNHPFFCPNVKTYDIAEYPLVLHARKYGLNAAVAIRLRSTYTDNDDYILEFFLPINMTESAQQELLLDSLSCTMRRVCRSLRTVTDVELAGVEGERIMWFQEEENPRILSMSEENGHTKLSEGDCTTVSEIPMNLLSSRKIWNEAEYSYGQGISGERRQLEKRRSTTEKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVDGGLKFDPVIGGLVAAGSAFLEPNEQKRNLQMQNSDPVSRGKQIGINLEENDFCMERNEFRRSRNEGILNTRDISAVDYRENSKTMSVDDAKHKKMNHVTSFRAFSPNLALDFCLAKKEGENFGVNQSELRCDSSGRHLVAQSSSFLNGFDEMEMGLGRSDVMIEHNQQTFSNMTETSNESRTTVHGYSSSSESFQEPKSSKPNAYCVDSGSKIIVKATYKDDTMRFKFEPSAGCFQLYEELAKRFKLQTGTFQLKYLDDEAEWVMLVNDSDLQECIEIMDDAGTHSAKFLVLDVPFSLSSSGSSSCFLAGSL* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00673 975 SMART PB1_new 875 957 IPR000270 GO:0005515
Pte4g00673 975 ProSiteProfiles RWP-RK domain profile. 584 665 IPR003035 -
Pte4g00673 975 Coils Coil 975 975 - -
Pte4g00673 975 SUPERFAMILY CAD & PB1 domains 869 957 - -
Pte4g00673 975 PANTHER PROTEIN NLP8 128 968 IPR045012 GO:0003700
Pte4g00673 975 Pfam RWP-RK domain 597 645 IPR003035 -
Pte4g00673 975 Gene3D - 871 955 - -
Pte4g00673 975 Pfam PB1 domain 878 954 IPR000270 GO:0005515
Pte4g00673 975 ProSiteProfiles PB1 domain profile. 875 957 IPR000270 GO:0005515
Pte4g00673 975 MobiDBLite consensus disorder prediction 835 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00673 Pte-Chr4 37578875 37584674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00673 1 976 NLP Transcription Factor Family AT2G43500 47.225 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pte4g00673 PB1 7.1e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00673 - - qsa:O6P43_000048 1044.65