Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00665 ATGCCGCTTCCGACGAAGGCAAGCAAGCCAGTACAGGGCTTCGGAGGGAAGGAATCCGAGGAATCGGAGACTCCCTCTAACAACCTTTGGGTCGGAAACCTGTCTTCCGATGTCACCGATGGCGAACTCATGGAACTCTTCGCCCGATATGGTGCGCTTGATAGCGTCTCCACGTATTCGTCACGAAGCTACGCTTTTGTCTACTTCAAGCGCATTGAAGATGCCAAAGCTGCGAAGCAAGCCTTGCAAGGCACTGTTGTTCGTGGAAACTCATTGAAGATCGAGTTTGCGAGACTGGCTAAGCCTTGTAGAAGCTTATGGGTGGGTGGTTTCAGTTCAGGTCTTTCAAAGGAGGAATTGGAAGAGCAATTTCTTAAATTTGGAAAAATTGAGGATTTCCGTTTTCTGAGAGACAGGAATACTGCATTCGTTGATTACTTTAGATTGGAAGATGCTACTGAAGCAATGAAAAATATGAATGGGAAGCACATAGGTGAAGACCAGATTCGTGTGGATTTCTTGCGGTCACAACCAGCTAGAAGAGAGCAATGGGCTGATTCTAGAGATGGGCAGTTTCAAGGAAGAAATGCCGCTACTTTAGATTTATATGCTGGCCAAAAAAGACCTCAGTCATATTCCCAATTGCAAATGAGTAGAAAAGGGGACAGTCAACTGAGTAAAATATTGTGGATCGGTTACCCTCCCTCTGCTCAGATTGATGAGCAGATGCTTCACAATGCTATGATTTTATTTGGTGAAATAGAGGGAGTTAGAAGTTTTCCTTCCAGACATTGTTCCTTTGTCGAATTTAGAAGTGTGGATGAAGCTAGACGTGCTAAGGAGGGTCTGCAAGGTCGGCTTTTTAATGATCCGCGAATTACTATCTTGTTCGCAACGAGTGATCTTGCTCCAGGGAAAGATTACCCTACTTTTTATCTGGGAAATAAAGGGCCAAGGCCTGATATGTTGTTGAATGAACCTCAGTTCCTACCTGTGCAGATGGATGGCTTTGGTCATAATCGATCAACAGGATCAAATAACTTTGCAGGAAAGTTGCCACCTGGTGGTATTCTTGGACCGAGTGCATCAGCAAGGGCTTTGGGTCCTCAGGTAGCTATTGATCCACTGATTTCAGGTACTGAAGTGAATGATCTGATTGCTGGGCAAAAATTTCAGGATGGTAGAATAGGTTCAAACTGGAGAAGGCCATCCCCACCACCTGGTATACTTCCTTCTGCTGTACCAGGAACTGTAGCTCCCTCAAGATCTGCCACATCTGGTTCATGGGATGTTCTTGACATTAACCAATTACATAGAGACCCAAAAAGATTAAGAATGGATGGAGCCTTGCCTGTAGAAGATCGTGGACTACCGATGGAATATGGTGGTGTTAGTCCAATTAGTGCAAGGATCACAAGCAAAGTTCCTAGTCCCAGTTCCGGTCCATCTGATAAAGATTTTATATGGCGTGGTATTATTGCAAAGGGCGGAACTCCTGTTTGCCGTGCTCGTTGCCTTCCTATAGGGAAGGGTATAGGAAATGATCTTCCTGAAGTTGTTAATTGCTCAGCCAGAACAGGGTTGGATTTGCTTACCAAACACTATGCAGATGCCATTGGATTCGATATTATTTTCTTTTTGCCAGACAGTGAAGATGATTTTGCTTCCTATACAGAATTCCTGCGCTACTTGGGTGCAAAAAACCGTGCTGGAGTGGCCAAATTTGATGATGGGACGACCTTGTTTTTGGTTCCTCCTTCTGATTTTTTAACAAGGGTTTTGAAAGTACCTGGTCCTGAACGTCTGTATGGGGTGGTTCTTAAGTTTCCACCAACAGGTAACACATCTGTTCGACAGTCGCCGCAAGTGCCTTATTCTGACAGACAGCAATATCCTTCCTACCAAGGTAATGGCTGTTTGCCACCTGCGATGGAGGAACATCTTCTGCCGGACTACAATAGGGTACGTGATGACTCAAAGCCTCCTCCTAAATCTTTTTATACACCAGTTACAGTGTCTCAGTCGGGCCTACAGGAATGTTCTTCTATTAGTAATATTTCTACATCCCAAGCTGGAGTAACTTTAACACCTGAGCTTATTGCAACTCTCACTTCGTTCTTGCCTACAACTGCACAAAATTCTGGTTTGGAGGGTAGCAAGGCAGCTCTAATCTCATCAGCGGTCAGGCCTCCCATTGCTTCTGTTTCTTCTGGTGATGGAAGTCAACCTAAACTATGGAAACATGATCAACATACTCCGCACTATACAGGCCATTCACCGGAGCAGTTGGGAAGTATGTATAATACTCAGCCAAGCCAGTATCAGCCTTATCCATCTGTGTCTGGCACTATTGGGCACCCTTCTCAAGTACTTCATGGTAGTTCTCAAATCTCAGATTCTGCTATGAGTCAGCAGCAGCAGCAGCAGGGTGCTGTTTCTTCTCGACCTTTGACCAACTATGTAGCACCTTCAGAAAGTGGACAAGTTTCTAATCCTACACAACTCAGCCAGCAGCACCTGACTGCTTCTATGCATAAAGGCTATGGAATGGTGCAGGGAATGGATTCCTCTAGTTTTTACAATGGCCAAATGTCTACGCAACCTAATGTTGCAGTTTGCGCATCTAATTTGACTCATGGGACTAATTTTGCACAAATGTCAAATGTTACCCCTTTTGTAACTGACAATCCTATGCAGCACCTTCAGTCCGCTGTTACTGGGGCTGGCCAAGGCATGCAAGATGCCGAGGCTGATAAGAATCAGCGGTACCAGTCAACTTTGCAATTTGCAGCTGATTTACTTCTCAAAATACAGCAACAGCATAAAACCCAAGGAGGGAAAGGACCTGCGAATTAA 2856 0.4489 MPLPTKASKPVQGFGGKESEESETPSNNLWVGNLSSDVTDGELMELFARYGALDSVSTYSSRSYAFVYFKRIEDAKAAKQALQGTVVRGNSLKIEFARLAKPCRSLWVGGFSSGLSKEELEEQFLKFGKIEDFRFLRDRNTAFVDYFRLEDATEAMKNMNGKHIGEDQIRVDFLRSQPARREQWADSRDGQFQGRNAATLDLYAGQKRPQSYSQLQMSRKGDSQLSKILWIGYPPSAQIDEQMLHNAMILFGEIEGVRSFPSRHCSFVEFRSVDEARRAKEGLQGRLFNDPRITILFATSDLAPGKDYPTFYLGNKGPRPDMLLNEPQFLPVQMDGFGHNRSTGSNNFAGKLPPGGILGPSASARALGPQVAIDPLISGTEVNDLIAGQKFQDGRIGSNWRRPSPPPGILPSAVPGTVAPSRSATSGSWDVLDINQLHRDPKRLRMDGALPVEDRGLPMEYGGVSPISARITSKVPSPSSGPSDKDFIWRGIIAKGGTPVCRARCLPIGKGIGNDLPEVVNCSARTGLDLLTKHYADAIGFDIIFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLTRVLKVPGPERLYGVVLKFPPTGNTSVRQSPQVPYSDRQQYPSYQGNGCLPPAMEEHLLPDYNRVRDDSKPPPKSFYTPVTVSQSGLQECSSISNISTSQAGVTLTPELIATLTSFLPTTAQNSGLEGSKAALISSAVRPPIASVSSGDGSQPKLWKHDQHTPHYTGHSPEQLGSMYNTQPSQYQPYPSVSGTIGHPSQVLHGSSQISDSAMSQQQQQQGAVSSRPLTNYVAPSESGQVSNPTQLSQQHLTASMHKGYGMVQGMDSSSFYNGQMSTQPNVAVCASNLTHGTNFAQMSNVTPFVTDNPMQHLQSAVTGAGQGMQDAEADKNQRYQSTLQFAADLLLKIQQQHKTQGGKGPAN* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00665 951 Gene3D - 101 206 IPR012677 -
Pte4g00665 951 FunFam Flowering time control protein FPA 19 101 - -
Pte4g00665 951 MobiDBLite consensus disorder prediction 731 832 - -
Pte4g00665 951 CDD RRM_SF 29 95 - -
Pte4g00665 951 SMART rrm1_1 105 172 IPR000504 GO:0003723
Pte4g00665 951 SMART rrm1_1 28 95 IPR000504 GO:0003723
Pte4g00665 951 SMART rrm1_1 228 296 IPR000504 GO:0003723
Pte4g00665 951 MobiDBLite consensus disorder prediction 405 425 - -
Pte4g00665 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 293 IPR000504 GO:0003723
Pte4g00665 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 93 IPR000504 GO:0003723
Pte4g00665 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 169 IPR000504 GO:0003723
Pte4g00665 951 CDD RRM_SF 239 295 - -
Pte4g00665 951 Gene3D - 207 303 IPR012677 -
Pte4g00665 951 Gene3D - 15 100 IPR012677 -
Pte4g00665 951 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Pte4g00665 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 300 IPR000504 GO:0003723
Pte4g00665 951 MobiDBLite consensus disorder prediction 1 31 - -
Pte4g00665 951 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 97 - -
Pte4g00665 951 Pfam SPOC domain 482 600 IPR012921 -
Pte4g00665 951 MobiDBLite consensus disorder prediction 756 832 - -
Pte4g00665 951 SUPERFAMILY RNA-binding domain, RBD 102 300 IPR035979 GO:0003676
Pte4g00665 951 CDD RRM_SF 106 172 - -
Pte4g00665 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Pte4g00665 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00665 Pte-Chr4 37479935 37488193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00665 28 290 Eukaryotic Initiation Factors Gene Family AT2G23350 24.561 4.08e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00665 - - qsa:O6P43_000058 1161.36