Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00652 ATGCATTCAAAGCAATCTGACGAGGTGGATGGGTCTAGATCTAGGCCTCTGCGGACAAGTGGTAGGATCAGGAGAAGGCCGCAGGTGTTTGCACGCTCGTATTACTATTATGGTTCCAAAATGATACTCAAAAGACAAAGCAATACCAAGTCAAGACAAGCTGCAGTAGAGATTGCGAAGAAGTTTACAGAGAACCAACCAGTGCGAAATTCAAAAACGGATTCTATCGCTTCAAATCTTCGGCGTTCAACTAGAAAGCGAAAAGCTCCTTCTAATCTTGGAGAATATGTGGACAGTTCTGGAGCTGAGGATATGGATTTGATGAGACCTAGCAAATATCGGCCTATGAGAAGAAAAATTGAGAATAGTGTCAGTCAAGATGAATTACTGTCTCCAAAGAACAGAAAGGTTGCAGAGACTAAATCAAACCCCCGACGCGAAGGTCTACGTCCACGCCACTCAAAGACTGTTGCAAGAGAAGAATTGCATTTTGAATCAGATGAAGATCGAGAAACTTCAGAAGACAAGATTGGACTAGACGAAACTGACGATGGGAATGATACTGATGATAATGATGCTGATGATGGTCATTTGGAGGGTGAAGTTGAGGGTGATGGTGAGGGAGAGGAGGGTGAAGGTGAAGAAGATGTAGATGGCGATGATGAAGAGGAGCATGACGGTAGAAGGCGCTATGATCTTCGAAACCGTGCTGATGTACGCAGGTTCTCTATGGGTGAGGGTAAGCTACAACCTAGATCTCCTCGAAGAGTATTACATCAAGGAATGGGAACCAAGGTTGGTAGGGACATCAGAAAGAGTGGATCACGAGTTCACAAACGTCAGAGAATTGCAAGGACTGAAGATTCTGATGACTCTCTTCTTGTGGATGAACTAGACCAAGGCCCCTCTATTCCCTGGGGACGAGGGAGTAGATCTGGACCACCTTGGTTGTTTGGGGGACTAGACATGCATGGGGCTACAGCATGGGGTTTGAATGTTGCTGCATCTGGTTGGGGTCATCAAGGTGAGGCATTTGCAACATTGACCTCTGGGATACAAACTGCTGGGCCAAGTTCTAAGGGAGGGGCTGATATACAACCAGTGCAGGTTGATGAGAGTGTCAGTTTTGATGATATTGGTGGGCTCTCTGAGTATATTAATGCTTTAAAGGAGATGGTTTTCTTTCCTCTCCTATATCCAGATTTTTTTGCAGGTTATAATATCACCCCACCGAGAGGAGTGTTGTTATGTGGTCCACCAGGTACTGGTAAAACATTAATAGCTAGAGCTTTAGCCCGTGCTGCATCAAAAGCTGGCCAGAAGGTGAGCTTTTACATGCGAAAGGGGGCAGATGTCCTGAGTAAGTGGGTTGGTGAGGCAGAAAGACAGTTGAAACTACTGTTTGAGGAAGCCCAAAGGAATCAACCTTCCATAATTTTCTTTGATGAAATTGATGGACTTGCTCCTGTGAGATCTAGCAAACAAGAGCAAATTCACAATTCCATCGTGTCCACTTTGCTTGCTCTAATGGATGGTCTTGATTCACGCGGACAAGTTGTTTTGATTGGTGCAACAAACAGGATTGATGCTATAGACGGTGCTTTGCGTCGACCTGGTCGATTTGATCGTGAGTTCAACTTTCCATTGCCTGGCTGTGATGCTCGGGCCGAAATATTAGACATCCATACTCGCAAGTGGAAGCATCCTCCTTCAAAGGAACTAAAAGCTGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGATTTGAAAGCTCTTTGCACTGAATCTGCTATCCGAGCTTTTCGTGAAAAATACCCTCAGGTGTACTTAAGTGATGACAAATTTCTCATAGATGTTGATTCAGTTAAGGTTGATAAGCACCATTTCATTGAAGCAATGTCAACAATCACTCCTGCTGCTCACAGGGGTGCAATTGTTCACTCTAGGCCATTGTCTCCTGTAGTTGCTCCCTGTTTATCGAGACATCTTCAAGCTGCTATGATTTACATTTCTGACATTTTCCCACCAGTTGCCGTTTCATCTGAATTGACCAAGCTCTCTATGCTTTCCTATGGTTCTGCAATTCCTCTAGTGTATCGGCCAAGGCTTCTCTTATGTGGTGGTGAAGGTACTGGGATGGATCACCTTGGACCTGCTATTTTACATGAACTGGAGAAGTTTCCTGTCCATTCATTAGGACTTCCATCACTTCTTTCAGATCCTAGTGCAAAGACACCTGAAGAGGCATTAGTACACATCTTTGGGGAAGCACGGAGAGCAACACCATCAATTTTATACCTACCACAGTTTGATCTTTGGTGGGAAACTGCACATGAGCAACTGAGAGCTGTTATGTTGACATTGCTTGAAGAATTGCCATCTGATTTACCTATATTGTTACTTGGAACATCCTCGGTTCTTCTAGCTGAAGGTGATGAAGCACCATCAATTTTCCCTCGACACTCAGTATACCAAGTGGGTATCCCATCCACCAATGACAGATCTTTGTTTTCTGATCGATTGATTGAAGCTGCTATGTCAGTCTTGTTGGAGGGAATGACCCAGAAGTCCCAAAATTCAGTATCAATTACTGAACTTCCCAAGGCACCAAAAGTAGCAAGTGGTCCAAAGGAATCTGAGTTGAAAGCAAAGGTTGAAGCTGAGCAGCATGCATTACGCAGAATGAGGATGTGCCTTAGAGATGTCTGCAACAGGTTTTCTAATATGGTTTAA 2736 0.4426 MHSKQSDEVDGSRSRPLRTSGRIRRRPQVFARSYYYYGSKMILKRQSNTKSRQAAVEIAKKFTENQPVRNSKTDSIASNLRRSTRKRKAPSNLGEYVDSSGAEDMDLMRPSKYRPMRRKIENSVSQDELLSPKNRKVAETKSNPRREGLRPRHSKTVAREELHFESDEDRETSEDKIGLDETDDGNDTDDNDADDGHLEGEVEGDGEGEEGEGEEDVDGDDEEEHDGRRRYDLRNRADVRRFSMGEGKLQPRSPRRVLHQGMGTKVGRDIRKSGSRVHKRQRIARTEDSDDSLLVDELDQGPSIPWGRGSRSGPPWLFGGLDMHGATAWGLNVAASGWGHQGEAFATLTSGIQTAGPSSKGGADIQPVQVDESVSFDDIGGLSEYINALKEMVFFPLLYPDFFAGYNITPPRGVLLCGPPGTGKTLIARALARAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILDIHTRKWKHPPSKELKAELAASCVGYCGADLKALCTESAIRAFREKYPQVYLSDDKFLIDVDSVKVDKHHFIEAMSTITPAAHRGAIVHSRPLSPVVAPCLSRHLQAAMIYISDIFPPVAVSSELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGMDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRATPSILYLPQFDLWWETAHEQLRAVMLTLLEELPSDLPILLLGTSSVLLAEGDEAPSIFPRHSVYQVGIPSTNDRSLFSDRLIEAAMSVLLEGMTQKSQNSVSITELPKAPKVASGPKESELKAKVEAEQHALRRMRMCLRDVCNRFSNMV* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00652 911 FunFam ATPase family AAA domain-containing protein 2B 550 635 - -
Pte4g00652 911 SMART AAA_5 410 551 IPR003593 GO:0016887
Pte4g00652 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 840 IPR027417 -
Pte4g00652 911 MobiDBLite consensus disorder prediction 132 179 - -
Pte4g00652 911 MobiDBLite consensus disorder prediction 1 17 - -
Pte4g00652 911 Pfam AAA+ lid domain 576 612 IPR041569 -
Pte4g00652 911 Pfam ATPase family associated with various cellular activities (AAA) 414 549 IPR003959 GO:0005524|GO:0016887
Pte4g00652 911 MobiDBLite consensus disorder prediction 105 124 - -
Pte4g00652 911 MobiDBLite consensus disorder prediction 180 222 - -
Pte4g00652 911 FunFam ATPase family, AAA domain-containing 2 372 555 - -
Pte4g00652 911 Gene3D - 550 635 - -
Pte4g00652 911 Gene3D - 689 822 IPR027417 -
Pte4g00652 911 Gene3D - 372 642 IPR027417 -
Pte4g00652 911 PANTHER AAA DOMAIN-CONTAINING 52 907 IPR045199 -
Pte4g00652 911 MobiDBLite consensus disorder prediction 862 882 - -
Pte4g00652 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 640 IPR027417 -
Pte4g00652 911 ProSitePatterns AAA-protein family signature. 519 537 IPR003960 GO:0005524|GO:0016887
Pte4g00652 911 MobiDBLite consensus disorder prediction 65 232 - -
Pte4g00652 911 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 819 837 - -
Pte4g00652 911 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 418 437 - -
Pte4g00652 911 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00652 Pte-Chr4 37390243 37398892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00652 360 608 Calmodulin-binding Proteins AT3G56690 36.759 4.65e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00652 K22531 - tcc:18602557 1378.62