Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00625 ATGGGAAGCTGCGTTTCCACGGCCGCAAAAGGATTTTACAAGAGGTCCAAGGGGGGACCGAAGCCGGCAACCCCAAGACAGAGCCAAGAATTCGAGCCACCCGCGAGAAGATCAGTACTGGGTGCCAATGTCATTGATTTCCCCGCCCCAGGAAACATCTTTGACAAATATCAGTTTGGGAAGGAATTAGGCCGCGGAGAATTCGGTATAACCCATCAATGTTTCGAGATCGAGACTGAGAAGGCTTATGCCTGCAAGAAAATACCAAAGAGTAAGCTCAGGACGGAGATTGACGTCGATGATGTCAGGAGAGAGGTTCAGATTATGTTGCATTTGCCTGAACATCCTAACATTGTGGCCTTCAAGGAAGTCTACGAGGACAAGGATGCTGTTTATCTTGTCATGGAACTTTGTAAAGGGGGAGAGCTTTTTGATAGGATTATAGCTAAAGGCCATTACACCGAACGTGCTGCAGCTAATGTTATCAACACAATTATTGAGGTTTGCAAGGTATGCCATGACCATGGGGTTATACACAGGGACTTGAAACCAGAAAATTTCTTGTATACAGATGAAAGTGAGGGTGCTCACTTGAAGACAATTGACTTTGGCCTGTCAACATTTTTCAATGCCGACAGCGACCAAAGGTTCGATGAAATTGTTGGGAGTCCCTATTACATGGCTCCAGAGGTCTTGAGACGAAATTATGGACCAGAAGTTGATGTCTGGAGTGCAGGTGTTATCCTTTATATATTACTCTGTGGTGTTCCTCCCTTCTGGGCAGAAACTGAGGAAGGTATTGCACAGGCGATTATCAGAGGCGAGTTAGATTTTGAAAGGGATCCATGGCCAAAAGTCTCAGAAAGCGCAAAAGATCTTGTTAGGGGTATGCTTGATCCAAGCCCCTATAACCGAGTCACTGTTGCTGAAGTTATCGAACATCCTTGGATTAAAAATCGAGATATGATTCGTAATGTCCCTCTTGGAAATAAAGTGACAACAAGGATCAAGCAGTTCTACTTGATGAACAAGTTCAAGAAGGAAGTTCTTAGAGTTGTGGTAGAGATGTTACCGAATGAACAACTTGATAGCATGAGGAAGACATTCCATATGTTGGACACCGACAAGAATGGGCATCTATCATTTGAAGAGCTCAGAGACGGTCTCTATATGATTGGACATTCCATTCCAGATCACGATTTGAAGATGTTAATGGATGCCGCTGATGCTGATGGAAATGGCACACTAAATTGCGAGGAATTTTTGACGATGTCTTTTCACATGAACACTAATAGTTGTGATGAGCTCCTTCCGGAAGCATTCACTTACTTTGACAAGAACGGAAGTGGGTACATTGAATTTGATGAACTAAGGGAAGCTTTGTTCCTTCATGATTTTAGTCCAGACAAGGACAAAGTAGTTGGAGACATCTTGTTTGATATTGACTTGGACAAGGATGGTCGGATCAGTTTTGATGAGTTCAAGACAATGATGAAGACAGGAATGGACTGGAAAATGGCTTCTCGCCAGATCTCAAGAGCAATGCTAAGTGCATTGAGCTTCAAAATGTTCAAGGACCAATCTGCGTAG 1590 0.4352 MGSCVSTAAKGFYKRSKGGPKPATPRQSQEFEPPARRSVLGANVIDFPAPGNIFDKYQFGKELGRGEFGITHQCFEIETEKAYACKKIPKSKLRTEIDVDDVRREVQIMLHLPEHPNIVAFKEVYEDKDAVYLVMELCKGGELFDRIIAKGHYTERAAANVINTIIEVCKVCHDHGVIHRDLKPENFLYTDESEGAHLKTIDFGLSTFFNADSDQRFDEIVGSPYYMAPEVLRRNYGPEVDVWSAGVILYILLCGVPPFWAETEEGIAQAIIRGELDFERDPWPKVSESAKDLVRGMLDPSPYNRVTVAEVIEHPWIKNRDMIRNVPLGNKVTTRIKQFYLMNKFKKEVLRVVVEMLPNEQLDSMRKTFHMLDTDKNGHLSFEELRDGLYMIGHSIPDHDLKMLMDAADADGNGTLNCEEFLTMSFHMNTNSCDELLPEAFTYFDKNGSGYIEFDELREALFLHDFSPDKDKVVGDILFDIDLDKDGRISFDEFKTMMKTGMDWKMASRQISRAMLSALSFKMFKDQSA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00625 529 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Pte4g00625 529 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Pte4g00625 529 CDD STKc_CAMK 56 316 - -
Pte4g00625 529 MobiDBLite consensus disorder prediction 13 33 - -
Pte4g00625 529 Gene3D Phosphorylase Kinase; domain 1 59 142 - -
Pte4g00625 529 SMART efh_1 473 501 IPR002048 GO:0005509
Pte4g00625 529 SMART efh_1 436 464 IPR002048 GO:0005509
Pte4g00625 529 SMART efh_1 400 428 IPR002048 GO:0005509
Pte4g00625 529 SMART efh_1 364 392 IPR002048 GO:0005509
Pte4g00625 529 SMART serkin_6 57 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00625 529 Pfam Protein kinase domain 57 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00625 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 486 - -
Pte4g00625 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Pte4g00625 529 FunFam calcium-dependent protein kinase 13 143 325 - -
Pte4g00625 529 Gene3D - 326 501 - -
Pte4g00625 529 SUPERFAMILY EF-hand 346 503 IPR011992 -
Pte4g00625 529 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Pte4g00625 529 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Pte4g00625 529 FunFam Calcium-dependent protein kinase 7 326 502 - -
Pte4g00625 529 Gene3D Transferase(Phosphotransferase) domain 1 143 325 - -
Pte4g00625 529 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Pte4g00625 529 Pfam EF-hand domain pair 438 499 IPR002048 GO:0005509
Pte4g00625 529 FunFam Calcium-dependent protein kinase 1 59 142 - -
Pte4g00625 529 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Pte4g00625 529 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Pte4g00625 529 SUPERFAMILY Protein kinase-like (PK-like) 44 350 IPR011009 -
Pte4g00625 529 ProSiteProfiles Protein kinase domain profile. 57 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00625 529 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Pte4g00625 529 Pfam EF-hand domain pair 377 427 IPR002048 GO:0005509
Pte4g00625 529 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00625 Pte-Chr4 37119092 37122099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00625 1 526 EF-hand Containing Proteins AT2G31500 63.139 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pte4g00625 Pkinase 2.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00625 K13412 - qsa:O6P43_000088 769.615