Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00618 ATGGGGCGGAGGAAGGTGGAGATGAAACGAATCGAGAACAAGAGCAGTCGGCAGGTGACATTCTCAAAGAGGAGGACTGGGTTAGCGAAGAAAGCGGGACAGATCTCTGTGCTCTGCGATGTGGATGTCGCTCTCGTCATCTTCTCCAGCCGTGGCAAGCTTTATGAGTACTCCTTCGGTACCACCAGTTTGGGCAGCATCCTAGATCGATATCGAAACAGCGAGGTAGAAAAACCAATGCTAGACCCTCGATGCATCGATGATTCACAGAATGTTAACACTGCATATGCAAACTTGCAGTCACCTTTACAGCTTGCTGAGATTGTTGAAAGAGACCTTCAGGAACCTAAAATTCAGGATCTGACAGTTGCTGACCTATTACAACTGGAGACAAAATTTAACTCTGCACTTTCACTAACCAGATCGATGAAGCTCCAACTCATGATGGAGAACATGAATACACTTCGCAAACAGGAAAAGCTGCTTCTGGAGGAAAATCAGAATCTGAAAGATAAGATTACTGCATCAAAGATTGATCTAGAGGAGGCTGCTGCTAATCTGCTGTTGGGGTTTAATCAAGCAGACAACAATTATGCTTGA 600 0.4517 MGRRKVEMKRIENKSSRQVTFSKRRTGLAKKAGQISVLCDVDVALVIFSSRGKLYEYSFGTTSLGSILDRYRNSEVEKPMLDPRCIDDSQNVNTAYANLQSPLQLAEIVERDLQEPKIQDLTVADLLQLETKFNSALSLTRSMKLQLMMENMNTLRKQEKLLLEENQNLKDKITASKIDLEEAAANLLLGFNQADNNYA* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00618 199 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte4g00618 199 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte4g00618 199 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte4g00618 199 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pte4g00618 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte4g00618 199 Coils Coil 145 186 - -
Pte4g00618 199 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Pte4g00618 199 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Pte4g00618 199 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte4g00618 199 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte4g00618 199 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte4g00618 199 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte4g00618 199 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte4g00618 199 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00618 Pte-Chr4 37031344 37040751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00618 1 192 MADS-box Gene Family AT5G65060 41.667 1.66e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte4g00618 K-box 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00618 - K09264 cave:132177176 171.4