Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00583 ATGGGCTCAGTTTGTTGCTGCTTTAGTGTTGATGATTTTGAAGATTATGTGAATCCAAATAGTTCTGTGTATAGGAACTGTACATGTCTTCGTTGTTTTGTACAAAACTTCTTAAGTTTGTATACATCACTATTTCGTAGAGGAGAAGTGCATTCCCTCCCTTCATCTGTACAGGGAGGCGCATCTATTACTTCTACATCATCACTTGATACTTATTTATCAGACATGTATCGCTCACCTCCAAGGCCCTTGCCCTATGATGCTGACTCTGGGTATTTCCGATTGCAACGTGACGGACTTGTTTCAAGGCGTGAGAAAGGCTCTAGTCATTCTAATGAGGAGTCTGAACCTCTGAGAAGTAACGTTGATGAAGATTCAGACTCTTTAAACGCAAGAGGTAAATGGAATGGATCTGCTTGTGAAGAGGGATCAAAGGAATACTATTCAAAGTCTTCAATGAAACTATCATCTGCAAAATTTTCAACAGATGTAGCACAAATCTATGCATCTCCTGAAGATGAAGATTTTTGCCCAACTTGTCTGGAGGAATATACTTCAGAAAACCCCAAGATATTGACAAAATGCTCTCACCATTTTCATCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGATAACTGTCCAGTTTGTGGAAAGGTGATGGCATTCGATGAAGAAACCAGCTAG 687 0.3974 MGSVCCCFSVDDFEDYVNPNSSVYRNCTCLRCFVQNFLSLYTSLFRRGEVHSLPSSVQGGASITSTSSLDTYLSDMYRSPPRPLPYDADSGYFRLQRDGLVSRREKGSSHSNEESEPLRSNVDEDSDSLNARGKWNGSACEEGSKEYYSKSSMKLSSAKFSTDVAQIYASPEDEDFCPTCLEEYTSENPKILTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDEETS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00583 228 CDD RING-H2_AIRP1-like 173 221 - -
Pte4g00583 228 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Pte4g00583 228 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Pte4g00583 228 MobiDBLite consensus disorder prediction 102 130 - -
Pte4g00583 228 SMART ring_2 177 217 IPR001841 -
Pte4g00583 228 MobiDBLite consensus disorder prediction 102 140 - -
Pte4g00583 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 61 225 - -
Pte4g00583 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 225 IPR013083 -
Pte4g00583 228 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Pte4g00583 228 SUPERFAMILY RING/U-box 172 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00583 Pte-Chr4 36489523 36493853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00583 1 225 C3H Transcription Factor Family AT5G15790 62.609 1.26e-97 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00583 - - mnt:21401143 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00583 4 36489523 36493853 Pte4g00583 4 36489523 36493853 RCT