Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00577 ATGATTAATCAGACTCATCTAGTTCTTATTTGTGTATCTGTCGGTTTGGCCCTTGGCCTTTCAATAGCTTCCCTCATATATTTTTGCATAAGGTGGTACAAAAAGCGTGCCAATCTTCGAAGATGTGCAAGCGAGCTCAGTTTGCCAACTCTCCCTATTCGTTATAATGGCTTTGGAGCTAGTACTGACGTCAGTGCATCTCTCGGGGGTTTTGTAGAAACTCAAGGTTCACAAAACCTCAAGAAGAGTTCTCGTTTCAGTTGGTGGAATAATCAGAACAAAGATCGTTTTTCTTCTGCATCAGGAATTCCTACATACTCATACAAGGAAATCCAAAAAGCAACTCAAACTTTCACCACTGTCCTGGGACATGGATCATTTGGTCCAGTCTACAAAGCCACGATGGTGACGGGAGAAGTGGTAGCGGCGAAGATGCTTGCTTCTGATTCTAAACAAGGGGAAAAAGAATTTCACACAGAAGTTTCACTTCTTGGGAGACTGCACCATCGAAATCTTGTGAATTTGGTGGGTTATTGTGTAGATAAAGGACATCGTATCTTGATCTACGAGTTCATGAGCAACGGAAGCTTAGAGAAGATCCTTTACTGTGAAGAAAACAAGGCTTTAAGTTGGGATCAGAGGCTTCAAATTGCTCTTGATATTGCCCATGGAATTGAATACCTCCACGAAGGGGCTGTCCCACCAGTTGTACATCGGGATCTGAAATCTGCAAATATATTGTTAGATCACTCCATGAGAGCAAAGGTTGCTGATTTTGGGCTCTCAAAGGAACAGCGGGTTTTGGATAGCCAGAAGTCTACACTCAAAGGTACATATGGGTACATGGATCCTGCGTACATATCCACAAGCAAATTCACAGTGAAGAGTGACATATACAGTTTTGGTGTTATTATTTATGAGCTCATCACTGCCATTCACCCTCAGAAGAACTTGATGGAGTTTGTTAATCTTGCTGCAATGAGTTATGATGGTGTGGATGAGATCTTGGATAAACAGCTTTTTGGAAAATGCGATATTGAAGAAGTAAGGATGCTGGCTAATGTTGCACATAGATGTGTGAACAAATTGCCGAAAAAGAGACCCACCGTAGCTGAAATATCACAGGCTATCTTGAAGATAAAACAGAGGCGACATGTTGCTCAAGATACCGTGTCATTTGCAAGCAGGATGGAAGATACAAAGGCTGAGCCAGAATCCTGCATGAGGGAGCCAGTATGA 1239 0.4229 MINQTHLVLICVSVGLALGLSIASLIYFCIRWYKKRANLRRCASELSLPTLPIRYNGFGASTDVSASLGGFVETQGSQNLKKSSRFSWWNNQNKDRFSSASGIPTYSYKEIQKATQTFTTVLGHGSFGPVYKATMVTGEVVAAKMLASDSKQGEKEFHTEVSLLGRLHHRNLVNLVGYCVDKGHRILIYEFMSNGSLEKILYCEENKALSWDQRLQIALDIAHGIEYLHEGAVPPVVHRDLKSANILLDHSMRAKVADFGLSKEQRVLDSQKSTLKGTYGYMDPAYISTSKFTVKSDIYSFGVIIYELITAIHPQKNLMEFVNLAAMSYDGVDEILDKQLFGKCDIEEVRMLANVAHRCVNKLPKKRPTVAEISQAILKIKQRRHVAQDTVSFASRMEDTKAEPESCMREPV* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00577 412 Gene3D Phosphorylase Kinase; domain 1 79 191 - -
Pte4g00577 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Pte4g00577 412 SMART serkin_6 116 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00577 412 Gene3D Transferase(Phosphotransferase) domain 1 192 402 - -
Pte4g00577 412 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 390 - -
Pte4g00577 412 FunFam PTI1-like tyrosine-protein kinase 3 192 391 - -
Pte4g00577 412 SUPERFAMILY Protein kinase-like (PK-like) 86 375 IPR011009 -
Pte4g00577 412 FunFam S-receptor-like serine/threonine-protein kinase 86 191 - -
Pte4g00577 412 Pfam Protein tyrosine and serine/threonine kinase 118 376 IPR001245 GO:0004672|GO:0006468
Pte4g00577 412 ProSiteProfiles Protein kinase domain profile. 116 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00577 Pte-Chr4 36414775 36419422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00577 78 382 Receptor kinase-like Gene Family AT1G79620 41.562 1.07e-70 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Pte4g00577 PK_Tyr_Ser-Thr 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00577 - - cave:132183159 580.867