Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00551 ATGAAGCTCAATATCAATGGTGCTGACATGGATGACCATAGTGCTGGTCATAAATGGCCTCGTACTTGTGACATATGCCAGTCTGCAGCCTGCAAAGTGTATTGCAGAGCTGATGATGCTTACCTGTGCAGCACATGCGACTCTAGAATCCATGCTGCTAATCACTTGGCATCAAGACATGAGCGTGTGTGGGTCTGTGACGCTTGTGATTGTGCCCCTGCAGCTTTTCTATGTAAGGCTGATGCTGCGTCTCTCTGCTCTGCCTGTGATGCAACCACACACTCTGCAAACTCACTTGCAGGCCGCCACCAACGTGTTCCAATCGTGCCTATATCTGGCTGCAGCTTCCATGAAAAGAGGAACGTTGAATTTCTAGCTCAAGGAGAAGAGGAGGAGGAGGAAGATGAAGCTGCTTCATGGTTATTTTTGAATCCTGTAAAGAATATCAGCAATCAGATCAGTTACTTGTTCGGTGAAGACGTTGATGATTATTTGGACCTCGAGGACTACAATCCTGGTGATAAAAACCAGTTCAATGAGCATGAACAGTCTCGGTATCATATGCAACCAAAACAAGAAGGAATTCAACAGAAGACGTATGGAGGTGATAGCGTTGTTCCCATTGGTGCTGCAGATTTCAGAGAACAATCACAGCAGCAGAATTCGGTGGGGTTTGGCTTTGACTACACAAAAGCTGATTACTCTTACAATTGTTCTTTTACTCAAAGTGTTTCAGGTTCATCTATGGATGTTGGAATTGTACCAGAATCAACCCCGGCTGATGTTTCACTCACCCCAGATCCACGATTGACTAAACAAACGGTTGAACCCTTCTCTAGCTCTCCAATTCAGATGCCCCAACAGCTCAATCAAATGGACAGGGAAGCCAGAGTGCTACGTTACAGGGAGAAGAAGAAGTCAAGAAAGTTTGAGAAAACAATAAGATATGCTTCAAGGAAAGCATATGCAGAAACCAGACCACGTATCAAGGGTCGGTTTGCTAAAAGAACAGAACGAGCGGAAGGTGAAGTTGATCAAATATTACCCACAACAGTAAGCGCTGGATCTGGATATGGGATTTTCCTTTTTTCTGATATAGGAAGAGGAAGAGAGGAATAA 1119 0.445 MKLNINGADMDDHSAGHKWPRTCDICQSAACKVYCRADDAYLCSTCDSRIHAANHLASRHERVWVCDACDCAPAAFLCKADAASLCSACDATTHSANSLAGRHQRVPIVPISGCSFHEKRNVEFLAQGEEEEEEDEAASWLFLNPVKNISNQISYLFGEDVDDYLDLEDYNPGDKNQFNEHEQSRYHMQPKQEGIQQKTYGGDSVVPIGAADFREQSQQQNSVGFGFDYTKADYSYNCSFTQSVSGSSMDVGIVPESTPADVSLTPDPRLTKQTVEPFSSSPIQMPQQLNQMDREARVLRYREKKKSRKFEKTIRYASRKAYAETRPRIKGRFAKRTERAEGEVDQILPTTVSAGSGYGIFLFSDIGRGREE* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00551 372 CDD Bbox1_BBX-like 23 65 - -
Pte4g00551 372 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Pte4g00551 372 SMART bboxneu5 18 65 IPR000315 GO:0008270
Pte4g00551 372 SMART bboxneu5 66 108 IPR000315 GO:0008270
Pte4g00551 372 Pfam CCT motif 294 336 IPR010402 GO:0005515
Pte4g00551 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 349 IPR045281 GO:0009909
Pte4g00551 372 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Pte4g00551 372 CDD Bbox1_BBX-like 65 108 - -
Pte4g00551 372 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Pte4g00551 372 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00551 Pte-Chr4 35819407 35823280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00551 19 360 C2C2-CO-like Transcription Factor Family AT3G02380 52.149 5.88e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte4g00551 zf-B_box 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00551 K12135 - egr:104419471 393.66