Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00546 ATGGCTTCAATAGTTTTCCCTTCACCTAATTCTTCCCCTTCAGCAGCTTCGCCAACTTCTGCATTTTCACCTCCAACTTTGTCAACATCCCCATTAAATTCTTCTGAAGGAGTACTACCTCCTACAGCTTCTCAGCCTGATCAAACAAATGAAACACCTGTGGCTTCAAGTCCTTCTACCTCTTCTGCTCCACCTCCTTCTACCTCAACAGTTCCAGATACACCTCCTCCTCCTCCTCCAGTTTCACCTGCTCCAACTTCACCATCACCACCAATTACCTCAGCTCCACCACCTTCAGTTCCAGCATCTCCTCCACCAACAACGCCAGCATCTACACCACCATCGACTCCAGCATCGCCACCTCCATCAATTCCAGCTTCTCCACCCCCATCACCTCCTTTGTTGCCGCCACCATCAAATCCTGCAACACCTCCCCTATCACAATCTACTCCCCCTCCTCCTCAAAGTTTATCTCCACCAATTGTAGGTTCTCCACCTTCCCAATTCTCTCCAGCACCTCCTGCATTGTCTCCCCCTCCCCCTCAAGTTGTTTCTCCTGCTGCTCCTTCTCCTCCAGTCAATCCTGCCACGCCACCAACTCCGAATAGAGGGCCACCAGAAAGATCTTCTCCACCTGCTTTTGCCACACCTCCTCCATCAGATTCTCAATCTGCTCCTCCTCCTCCTTCTTCATCAGATGGTCCACCAGGACCTGAATTGCCATCTTCTCCTCCTTCCATCCCCTCAACCACTTCACCTCCTTCACTTGCTCCTCCTGCCCCTTCTAATGATGCAAAACCATCCGGAAGTCCTCCCTTGGCACCCTTACCTAGCATTCCAACTGAGAAGCCCACTGCAAGATCTACCGATGGGGTCTCCTCAAATGATTCATCTACACATAAAGGTGGTCGTAGCACTGGAGGGGGTGTAGCAATTGGTGTTGCAGTTGGTTTTGTCATACTCAGTCTTGTTTTCATGGCTGTATGGTTTATAAACAAGCAAAAAAGAAGAAGTGGATCTAGGGTCGGTTATCCCTGGTCTTCTCCTGCTGCCTCATCACAAAATTCAGCTACCTTATTCCTAAAGTCAAATTCACCTGCTCGATTCTATGGAAGTGCATCTGGTAGTGAGTTAATGTATTCGCCGTCAGAGCAAGGAGGAATGAGCAATTCAAAAGCATGGTTCACATATGAAGAGCTAGTCCAAGCCACTAAAAGTTTTTCAGAACAAAATCTATTGGGTGAAGGAGGGTTTGGTTGTGTCTATAAAGGTCTTCTCTCAGATGGAAGGGAAGTTGCTGTGAAACAGTTAAAGATTGGAAGTGGACAAGGTGAGCGTGAATTCAAAGCAGAGGTTGAGATCATTAGCCGGGTACACCACAGGCATTTGGTTTCATTGGTGGGTTACTGCATATCCGAACATCAGAGGTTGCTTGTTTATGAATATGTTCCCAACAATACCCTACACAATCATCTGCATGGTGTTGAAATACCTGTTATGAGTTGGGGAACTAGAGTCAGAGTTGCAGCTGGTTCAGCTCGAGGAATAGCGTATTTACATGAAGACTGCCATCCACGCATAATCCACCGTGATATTAAGTCATCGAACATCCTCCTTGACAACAATTTTGAAGCCCGTGTTGCTGATTTTGGACTTGCAAAATTAGCATTGGATTCAAATACACATGTAACTACACGTGTCATGGGAACCTTTGGATACATGGCTCCAGAATATGCTACAAGTGGTAAATTGACTGAGAAATCCGATGTTTATTCCTTTGGGGTTGTGCTTTTGGAGTTGATTACTGGCCGCAAGCCTGTGGATGACTCTCAGCCAATTGGGGACGAGAGTTTGGTTGAATGGGCTCGCCCTCTACTGACTCGTGTGCTAGATAATGAAAATATTGAGGGCTTGGTAGATCCAAGGCTTGAAAATAACTATGATCCAAGGGAAATGTTTCGGATGATCGAAGCTGCTGCTGCATGTGTACGCCATTCTGCTGCTAAGAGACCCCGCATGAGTCAGGTTGTGAGAGCTTTGGTTTCTTTAGATGAATTATCAGATCTCACCAATGGAATGAAACCTGGCCAAAGCGAAATATTTAACTCAGCAGAGCAGTCAGCTCAAATTAGAATGTTTCAGAGGATGGCCTTCGGCAGCCAAGACTATAGTACAAGTTTTTTCAATGAGACGCATAGTAGTTGGAGGACTAGAGAGAGGGGAGACTCTAATTTCTTCCCAGACAACAATAGGTCTGGGGCATGGAATGTTTGA 2274 0.4644 MASIVFPSPNSSPSAASPTSAFSPPTLSTSPLNSSEGVLPPTASQPDQTNETPVASSPSTSSAPPPSTSTVPDTPPPPPPVSPAPTSPSPPITSAPPPSVPASPPPTTPASTPPSTPASPPPSIPASPPPSPPLLPPPSNPATPPLSQSTPPPPQSLSPPIVGSPPSQFSPAPPALSPPPPQVVSPAAPSPPVNPATPPTPNRGPPERSSPPAFATPPPSDSQSAPPPPSSSDGPPGPELPSSPPSIPSTTSPPSLAPPAPSNDAKPSGSPPLAPLPSIPTEKPTARSTDGVSSNDSSTHKGGRSTGGGVAIGVAVGFVILSLVFMAVWFINKQKRRSGSRVGYPWSSPAASSQNSATLFLKSNSPARFYGSASGSELMYSPSEQGGMSNSKAWFTYEELVQATKSFSEQNLLGEGGFGCVYKGLLSDGREVAVKQLKIGSGQGEREFKAEVEIISRVHHRHLVSLVGYCISEHQRLLVYEYVPNNTLHNHLHGVEIPVMSWGTRVRVAAGSARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEARVADFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDDSQPIGDESLVEWARPLLTRVLDNENIEGLVDPRLENNYDPREMFRMIEAAAACVRHSAAKRPRMSQVVRALVSLDELSDLTNGMKPGQSEIFNSAEQSAQIRMFQRMAFGSQDYSTSFFNETHSSWRTRERGDSNFFPDNNRSGAWNV* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00546 757 PRINTS Proline rich extensin signature 97 122 - -
Pte4g00546 757 PRINTS Proline rich extensin signature 20 41 - -
Pte4g00546 757 PRINTS Proline rich extensin signature 75 92 - -
Pte4g00546 757 PRINTS Proline rich extensin signature 51 67 - -
Pte4g00546 757 SMART serkin_6 407 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00546 757 ProSiteProfiles Protein kinase domain profile. 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00546 757 MobiDBLite consensus disorder prediction 282 304 - -
Pte4g00546 757 FunFam Proline-rich receptor-like protein kinase PERK8 379 482 - -
Pte4g00546 757 Gene3D Transferase(Phosphotransferase) domain 1 483 700 - -
Pte4g00546 757 CDD STKc_IRAK 413 680 - -
Pte4g00546 757 Gene3D Phosphorylase Kinase; domain 1 376 482 - -
Pte4g00546 757 MobiDBLite consensus disorder prediction 68 279 - -
Pte4g00546 757 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 316 722 IPR047117 -
Pte4g00546 757 MobiDBLite consensus disorder prediction 1 67 - -
Pte4g00546 757 MobiDBLite consensus disorder prediction 1 308 - -
Pte4g00546 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Pte4g00546 757 FunFam proline-rich receptor-like protein kinase PERK8 483 695 - -
Pte4g00546 757 SUPERFAMILY Protein kinase-like (PK-like) 386 680 IPR011009 -
Pte4g00546 757 ProSitePatterns Protein kinases ATP-binding region signature. 413 435 IPR017441 GO:0005524
Pte4g00546 757 Pfam Protein tyrosine and serine/threonine kinase 410 680 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00546 Pte-Chr4 35719282 35723585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00546 309 622 Trihelix Transcription Factor Family AT1G26150 67.089 1.09e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pte4g00546 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00546 - - gmx:100790988 747.658