Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00518 ATGGCTGCTGTGCCCAATTCTACTCCTTCATCCGCCGCCGTCGCTAACTTGAAACCCGTTTTCTTAACCAAAGCCCAAAGAGAGAAGCTAGCTCTTCAGCGCCGTCATGAAGCCGTCGCTGACCAGAAACGCCTCCGTGAGGACCTTATCCTTTCGGCAAACCGCCCTACCCACCCCGATTCGCACGCTGCCGATGCCAATCCTCTATCATCGGATCGTGATCGTGACAGGGACAGAGATAGAGATAGGGATAGGGATAGGGATAGAGACCGTGATGATCGTGATCGTGACCGTGACCGTGACCGTGACCGCCGTAGAGACTATGAACGGGAAAGAGATAGAGAAAGAGACAGAGATAGAAAGAGGGAGAGGGAACGCGAAGAAGAGGCCAGAGCAGCAGATCGCGAGCGGGCTCGTTTGGAGAAGCTGGCCGAGCGGGAGCGTGACAAAGAACTAGAGGCCATCAAAGAGCAGTACCTGGGATCCAAAAAACCAAAGAAGAGGGTCATCAAGCCCAGCGAGAAGTTTCGCTTCTCCTTCGACTGGGAGAACACCGAAGATACTTCCCGCGATATGAACGCTCTATATCAAAACCCTCACGAGGCTCAGCTTCTCTTCGGTCGTGGTTTCCGTGCTGGAATGGACCGTCGCGAGCAGAAGAAGCTTGCGGCCAAGAATGAGAAGGAATTACGAGAGGAGATTCGTAAGAAGGAGGGCATTGAGGAGGGGCCCGAGGAGGCTGCCGCGCAACGACTCAAGGAGCAGGCTGCTGATCTCTATGATACCTTTGACATGAGGGTCGACCGCCATTGGAGCGAGAAGGGCCTCGATGAGATGACTGAGAGGGACTGGCGTATCTTCCGCGAGGACTTTAACATTTCCTACAAGGGTTCAAGGATTCCACGTCCCATGCGCAACTGGGCAGAGAGCAAGCTCAGTGCTGAACTCTTGAAGGCCGTTGAGAAGGCTGGCTATAAGAAGCCCTCTCCTATTCAGATGGCTGCTATTCCCCTTGGTCTTCAGCAACGGGATGTCATTGGCATTGCTGAGACAGGTTCAGGAAAGACTGCTGCCTTTGTTCTTCCTATGCTGTCTTATATCACCAGACTTCCCCCTATCAGTGAAGACAATGAGGCCGAGGGCCCCTATGCAGTTGTCATGGCGCCCACGCGTGAACTTGCCCAGCAGATTGAGGACGAGACAGTTAAGTTTGCTCAGTACATGGGAATCAAGGTTGTATCCATTGTCGGTGGACAGTCCATTGAAGAGCAAGGTTTTAGGATTAGGCAGGGCTGTGAGATTGTAATTGCCACTCCTGGCCGTTTGATTGACTGCCTGGAGAGGCGTTATGCTGTTCTAAACCAGTGCAATTATGTTGTTCTGGATGAGGCTGATCGAATGATAGACATGGGGTTTGAGCCACAGGTTACGGGTGTATTGGATGCCATGCCTTCCAGCAATCTTAAACCAGAAAATGAAGATGAAGAGCTCGATGAGAAGAGAATTTACAGGACTACTTATATGTTTAGTGCCACGATGCCACCTGCTGTGGAGCGTCTTGCCAGGAAGTATCTGAGAAATCCGGTTGTGGTGACCATTGGCACAGCTGGAAAAACTACCGATTTGATCAGCCAGACTGTGATTATGATGAAAGAATCTGAGAAGCTTTCTCGGTTGCGCAGGTTACTTGATGATCTGGGTGACAAGACTGCCATTGTGTTTCTTAACACTAAGAAGAATGCAGACACAATTTCTAAGGCTTTGGAAAAGGAGTATCGAGTGACAACTTTGCATGGTGGAAAATCACAAGAGCAGAGGGAGAATAGTCTTGAAGGGTTCAGGACAAAGAGATTCAACGTCCTTGTTGCAACTGATGTTGTAGGACGTGGTATTGACATACCTGATGTGGCTCACGTTATAAACTATGATATGCCTGGCAATATTGAAATGTACACTCATCGTATTGGTCGAACTGGTCGGGCTGGGAAAACAGGTGCCGCCACAACATTCCTGACTCTACATGACACTGATGTCTTTTATGACTTAAAACAGATGCTTATACAAAGTAATAGTCCTGTTCCTCCTGAACTTGCACGTCATGAGGCTTCTAAGTTCAAGCCAGGAACTATACCTGATAGACCAGCTAGAAAAAATGATACTGTGTTTGCCCATTGA 2175 0.4947 MAAVPNSTPSSAAVANLKPVFLTKAQREKLALQRRHEAVADQKRLREDLILSANRPTHPDSHAADANPLSSDRDRDRDRDRDRDRDRDRDRDDRDRDRDRDRDRRRDYERERDRERDRDRKREREREEEARAADRERARLEKLAERERDKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKELREEIRKKEGIEEGPEEAAAQRLKEQAADLYDTFDMRVDRHWSEKGLDEMTERDWRIFREDFNISYKGSRIPRPMRNWAESKLSAELLKAVEKAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFRIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVTGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLISQTVIMMKESEKLSRLRRLLDDLGDKTAIVFLNTKKNADTISKALEKEYRVTTLHGGKSQEQRENSLEGFRTKRFNVLVATDVVGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGAATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPARKNDTVFAH* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00518 724 SMART ultradead3 324 546 IPR014001 -
Pte4g00518 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 683 IPR027417 -
Pte4g00518 724 Pfam Helicase conserved C-terminal domain 554 662 IPR001650 -
Pte4g00518 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 558 701 IPR001650 -
Pte4g00518 724 Gene3D - 536 722 IPR027417 -
Pte4g00518 724 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 305 333 IPR014014 GO:0003724
Pte4g00518 724 FunFam probable ATP-dependent RNA helicase DDX23 266 535 - -
Pte4g00518 724 Coils Coil 98 118 - -
Pte4g00518 724 SMART helicmild6 582 662 IPR001650 -
Pte4g00518 724 CDD DEADc_DDX23 316 532 - -
Pte4g00518 724 Gene3D - 266 535 IPR027417 -
Pte4g00518 724 MobiDBLite consensus disorder prediction 699 724 - -
Pte4g00518 724 Coils Coil 549 569 - -
Pte4g00518 724 MobiDBLite consensus disorder prediction 692 724 - -
Pte4g00518 724 Pfam DEAD/DEAH box helicase 330 520 IPR011545 GO:0003676|GO:0005524
Pte4g00518 724 Coils Coil 123 153 - -
Pte4g00518 724 FunFam probable ATP-dependent RNA helicase DDX23 536 723 - -
Pte4g00518 724 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 234 701 - -
Pte4g00518 724 CDD SF2_C_DEAD 543 671 - -
Pte4g00518 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 531 IPR014001 -
Pte4g00518 724 MobiDBLite consensus disorder prediction 49 137 - -
Pte4g00518 724 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 460 468 IPR000629 -
Pte4g00518 724 Coils Coil 217 237 - -
Pte4g00518 724 Coils Coil 22 42 - -
Pte4g00518 724 MobiDBLite consensus disorder prediction 67 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00518 Pte-Chr4 35054240 35056414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00518 311 698 Eukaryotic Initiation Factors Gene Family AT1G72730 33.077 2.11e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00518 K12858 - aew:130779364 1026.54