Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00513 ATGGCTGAACTGGGAAAAAATATGCAGTTCTTCAACTTTTCTCTTCCTTCTTCAGATCAACTGATGACAAACACACAAGTGTTGAACCAAATTAGAGAGCTGAATTCTAGCACCCTACTGGATCTCAGCTGTGAAGAATTGCCAAATGAAAGCATCTTCAATTACTGTTGCCACTCAGAGAATAGATATCCTAACTTGGTACAACCTCTTCCTTCTACTGCACAATCTGGCTGCTTAAATGAACCACCACCGATTCGTACCATCAATTCAATAAACACGACAGAAAGCAAGAGACCAAAGTTGATTCAATCAATACCAAGCAGTTTAGTAAACAAGTTCTCAAGAATTTCTGGAGAGGAATTGAATTCGAACATGATGAGTTCTAAACCAAAGAAAAACTTGAGGAGGAGGAAGAGGACGATCAACGATTGTGGGAATAGTGAAGGGGACAAGTCGAACGAAGTTATACATGTTAGGGCAAGGAGAGGGCAAGCTACAGACAGTCACAGTTTAGCAGAAAGGATGAGAAGAGAGAAGATCAATAACAAGTTGAAATGCCTGCAAGAAATAGTTCCTGGATGTCATAAGGAAATGGGTATGACATTAATGCTGGATCAGATAATCAACTATGTTCATTCTTTGCAGAGTCAAATTGAGTACCTATCCATGGAGCTTGAAGCTGCATTCTCCGGTGATGGGAACTTCAAAACAACAAAATCTAATGAGGCGACAAGGTCACATGAAGTAGAAGCAATGGAGAGATGGGCACAGGAACAATATGGAGATTACAACTGTTTCAACATGACATGGCCCCAATGA 819 0.4042 MAELGKNMQFFNFSLPSSDQLMTNTQVLNQIRELNSSTLLDLSCEELPNESIFNYCCHSENRYPNLVQPLPSTAQSGCLNEPPPIRTINSINTTESKRPKLIQSIPSSLVNKFSRISGEELNSNMMSSKPKKNLRRRKRTINDCGNSEGDKSNEVIHVRARRGQATDSHSLAERMRREKINNKLKCLQEIVPGCHKEMGMTLMLDQIINYVHSLQSQIEYLSMELEAAFSGDGNFKTTKSNEATRSHEVEAMERWAQEQYGDYNCFNMTWPQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00513 272 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Pte4g00513 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 226 IPR036638 GO:0046983
Pte4g00513 272 MobiDBLite consensus disorder prediction 139 169 - -
Pte4g00513 272 MobiDBLite consensus disorder prediction 123 169 - -
Pte4g00513 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Pte4g00513 272 Gene3D - 161 231 IPR036638 GO:0046983
Pte4g00513 272 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 119 233 IPR024097 GO:0006355
Pte4g00513 272 SMART finulus 170 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00513 Pte-Chr4 34966678 34968553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00513 148 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 55.085 1.33e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte4g00513 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00513 - - jre:108988216 198.364