Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00489 ATGGCTACTTTCTCAGGCCAAACCTCTGCGTTTTTGTTTCTTTTAATCTATATCTTCATCTCAACCTACACCCCCACATCTCTGTCTGCTGATTCCATGTACACAAACTGTTCTCGAACCTCAAACTGTGGTACCCTATCAGGTATCACATACCCTTTTTCTGGAATCGACAGACCAGATTATTGTGGACATCCAGGGTACGAGCTATCCTGTGATGGATCTGGTTTTCTGAAGATGAACATGAAGAGCAACACTTATATAATCACCGACTTGAACTCCAATACACAAACTCTTGCAGTTGCTAGGGATGATTATTGGACAACTCCATGTCCTTCTAACTTCAGAAATAGTACTGTGGATTTTTCTCTATTCAGCTACCATGGTGAAGTTGTCAACCTCACACAGTTCTATGGGTGCACCAATGGCGGAGGAGCAGGATTGTTGATTCGAGTCCCTTGCAATCCAAACAACATTGCGAATATCAGTTTTTTCTATTCTCAAGATCCATTTAATAACAATCCTGATCAACTTCAAACAGCACTTAAAGGTGGTTTTGGATTGACTTGGACTATGAGTGATCAATGCAACACATGCTCCCAATCTGGCGGTGCTTGTGGATATAATCGCGATAAAGGACAGTTTACATGTTATTGCTCTGATGGAACTCAACAATCTTCTCAGTGCCAAGGCTCTTCAGGCAAAAGTTCTTCAGTAGCCATTGGGATAGGAGTTGCTGCTGGAGTTGCAGCCATTGTTGTCATTCTCCTTTGTTGCTGGAGATTCGTAGTTGTAAAAAGGAAGGGGAAAAATACGGAACTGCTTCAAACCAATGGACCTACTAGCCTTCCTCCAAGCAAAACTACTACACCCTCCACAACTTATTCATCTCAAACCATCCCATCTTATCCTTCTTCACAAATATCAGATGTTGGAACCATTAATAAGAGCCACTACTTTGGACTTAAATTGTTTGATTCTGCAGAACTGGAAGCAGCCACAGCCAACTTTGATACTTCCAGAGAACTAGGCGATGGAGGCTTTGGCACGGTTTACTACGGCATACTTAAAGATGGTCGCGAGGTTGCAGTGAAGAGATTGTATGAGAGTAGCTGGAAACGTGTTGAACAATTCAAGAATGAAGTTGAGCTCCTAGCTCACTTAAGGCATCCAAACCTTGTCACACTCTACGGCTGCACTTCAAGAAACAGCAAAGAACTTCTCCTCGTGTATGAGTACATTCCAAATGGAACAATAGCGGATCATCTACATGGGAAGAAAGCAAATTCAGGTTTACTTACATGGCCAGTGAGATTGAACATGGCAATAGAAACAGCTGAGGCACTAGCATATCTTCATGCATCTGATGTTATTCACCGTGATGTCAAGTCCAACAACATTCTACTAGAGAAAAATTTTCGTGTCAAAGTTGCTGATTTTGGTTTGTCAAGGTTGTTCCCACCTGATGTGACTCATGTCTCAACTGCTCCACAAGGTACACCTGGTTATGTCGATCCGGAGTATTACCAGTGTTACCAACTTACAGACAAGAGTGATGTCTACAGCTTTGGGGTGGTGTTAATTGAACTGATATCGTCATTGGCAGCTGTAGACACCAATAGGGATAAGAGTAACATCAATTTGGCTAGCATGGCTATGAACAAAATCCAGAGCTATGCATTGCATGAGTTGGTTGATCCTTGTCTGGGATTTGAAAAAGACTATTCTGTTAGGCAGATGACAACAGCAGTTGCAGAATTAGCATTCAGGTGTTTGCAGCAGCAGAGGGATGTGAGGCCCACCATGGATGAGGTACTGCATGCATTGAGAGAAATTCAGAACCAGAAATTTGGTGCACAGAAAGCAGAAGTTATGGATATCAGAATTGATGAAGTTGGGCTCTTAAGAACTACTTCTCCTTCTCTTTCACCTGATTTTGGTTCTCCCAATGCTGATAAACTTCAGGTGGAGGTGTTAAGAAGAACAACTTAA 1989 0.4223 MATFSGQTSAFLFLLIYIFISTYTPTSLSADSMYTNCSRTSNCGTLSGITYPFSGIDRPDYCGHPGYELSCDGSGFLKMNMKSNTYIITDLNSNTQTLAVARDDYWTTPCPSNFRNSTVDFSLFSYHGEVVNLTQFYGCTNGGGAGLLIRVPCNPNNIANISFFYSQDPFNNNPDQLQTALKGGFGLTWTMSDQCNTCSQSGGACGYNRDKGQFTCYCSDGTQQSSQCQGSSGKSSSVAIGIGVAAGVAAIVVILLCCWRFVVVKRKGKNTELLQTNGPTSLPPSKTTTPSTTYSSQTIPSYPSSQISDVGTINKSHYFGLKLFDSAELEAATANFDTSRELGDGGFGTVYYGILKDGREVAVKRLYESSWKRVEQFKNEVELLAHLRHPNLVTLYGCTSRNSKELLLVYEYIPNGTIADHLHGKKANSGLLTWPVRLNMAIETAEALAYLHASDVIHRDVKSNNILLEKNFRVKVADFGLSRLFPPDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLIELISSLAAVDTNRDKSNINLASMAMNKIQSYALHELVDPCLGFEKDYSVRQMTTAVAELAFRCLQQQRDVRPTMDEVLHALREIQNQKFGAQKAEVMDIRIDEVGLLRTTSPSLSPDFGSPNADKLQVEVLRRTT* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00489 662 MobiDBLite consensus disorder prediction 273 300 - -
Pte4g00489 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 645 IPR044652 GO:0004672
Pte4g00489 662 SMART serkin_6 336 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00489 662 Pfam Wall-associated receptor kinase galacturonan-binding 37 101 IPR025287 GO:0030247
Pte4g00489 662 Gene3D Transferase(Phosphotransferase) domain 1 413 625 - -
Pte4g00489 662 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Pte4g00489 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Pte4g00489 662 Pfam Wall-associated receptor kinase C-terminal 172 221 IPR032872 -
Pte4g00489 662 SUPERFAMILY Protein kinase-like (PK-like) 321 618 IPR011009 -
Pte4g00489 662 CDD STKc_IRAK 342 611 - -
Pte4g00489 662 Pfam Protein kinase domain 337 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00489 662 Gene3D Phosphorylase Kinase; domain 1 309 412 - -
Pte4g00489 662 ProSiteProfiles Protein kinase domain profile. 336 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00489 662 FunFam Wall-associated receptor kinase-like 20 413 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00489 Pte-Chr4 34236346 34240876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00489 185 646 Receptor kinase-like Gene Family AT1G25390 50.215 4.65e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pte4g00489 Pkinase 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00489 - - qsa:O6P43_005636 682.945