Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00479 ATGCAGGTTCATATGGAGAAGGAAGCGTCACCTGCATCAGAGAGTACTGTTACCAACTCCACTAGTTCACTTACAACGAACTCTCAATCTCCACCTCTACGTTCTTCGACGGAGTCTATCTGCTTTGATTTTCTCAGAAAATATCCAGAAAATCAATCTTTCGGAACCAATTTTGCATCCATGTATCGTTCCATTTTCCCGCCAAAATCTCCAACACTCTCTCTAAGTCCTTCCACATCCTCCTCCACCGAAGACCAGCTCTACCACAACCACACCTTCGACGCCATTGCCACAGAGAACCGCCTCAACCAGACTCGTCTCATCCTGGAGTTTGATCAACTCCGTGATCACTACGATCTCTGCCGTGCTGAACTCCAAGACCTCATGGACGAGATTCAATTCCTCAGCCGTGAAAACGAGTTCCTCCGCCTCGCCAACACAAAACTAGTCAAGTACCTTTCTTCTCAAGTCACTATGCAGAACCTTCTCAATCACTCCTCCAGTCAGCAGAAGGCTTCGTTGCTCAACGAACTTCGCCGTCTCAATATCGGAGTTACCGCCGCTGATGAAATCTCCGATGTCAGTCCAACAAGCGTCATGGAACGCAGCAGCCCGGACCGGCTCACTCTGCCAAAGAGCATTTCCGTACGGTCCACCGGCTACCTCAAGCCAAATCAGATCCGAGCCGGTCCAAGTCGTCCAGCACCTGGCCCTCAAACTCCGAGTCAACTCGCTTCCAAATCGCAAACGGTGTATGTACCACCAGCTGGAGCAACACGAAAGAAAGAGGAGCCGGTGGAAGTTGAGGTTTACAACCAAGGAATGTTCAAGACGGAGCTTTGCAACAAATGGCAAGCAACAGGCACGTGTCCATACACAGGAAACTGTCTCTTCGCTCATGGCATTAATGAGTTGCGTCCGGTGATTAGACACCCAAGGTACAAGACTCAAGTTTGCAGGATGGTATTAGCTGGCGACAAGTGTCCCTACGGCCACCGTTGCCACTTCCGCCATTCACTCACTGAGCTGGAGCGAACGTCGTCGCGATGTCAAAACTAG 1059 0.5042 MQVHMEKEASPASESTVTNSTSSLTTNSQSPPLRSSTESICFDFLRKYPENQSFGTNFASMYRSIFPPKSPTLSLSPSTSSSTEDQLYHNHTFDAIATENRLNQTRLILEFDQLRDHYDLCRAELQDLMDEIQFLSRENEFLRLANTKLVKYLSSQVTMQNLLNHSSSQQKASLLNELRRLNIGVTAADEISDVSPTSVMERSSPDRLTLPKSISVRSTGYLKPNQIRAGPSRPAPGPQTPSQLASKSQTVYVPPAGATRKKEEPVEVEVYNQGMFKTELCNKWQATGTCPYTGNCLFAHGINELRPVIRHPRYKTQVCRMVLAGDKCPYGHRCHFRHSLTELERTSSRCQN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00479 352 MobiDBLite consensus disorder prediction 9 35 - -
Pte4g00479 352 MobiDBLite consensus disorder prediction 221 249 - -
Pte4g00479 352 Coils Coil 111 145 - -
Pte4g00479 352 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Pte4g00479 352 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Pte4g00479 352 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Pte4g00479 352 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Pte4g00479 352 PANTHER CCCH ZINC FINGER/TIS11-RELATED 121 347 IPR045877 GO:0003729
Pte4g00479 352 SUPERFAMILY CCCH zinc finger 272 307 IPR036855 GO:0046872
Pte4g00479 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 301 IPR000571 GO:0046872
Pte4g00479 352 FunFam zinc finger CCCH domain-containing protein 15-like 269 308 - -
Pte4g00479 352 FunFam Zinc finger protein 36, C3H1 type-like 1 309 345 - -
Pte4g00479 352 Gene3D - 309 346 - -
Pte4g00479 352 Gene3D - 269 308 - -
Pte4g00479 352 SUPERFAMILY CCCH zinc finger 309 344 IPR036855 GO:0046872
Pte4g00479 352 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00479 Pte-Chr4 33955734 33957947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00479 120 345 C3H Transcription Factor Family AT1G68200 50.202 7.53e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte4g00479 zf-CCCH 2.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00479 K18753 - qsa:O6P43_005646 385.571