Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte4g00479 | ATGCAGGTTCATATGGAGAAGGAAGCGTCACCTGCATCAGAGAGTACTGTTACCAACTCCACTAGTTCACTTACAACGAACTCTCAATCTCCACCTCTACGTTCTTCGACGGAGTCTATCTGCTTTGATTTTCTCAGAAAATATCCAGAAAATCAATCTTTCGGAACCAATTTTGCATCCATGTATCGTTCCATTTTCCCGCCAAAATCTCCAACACTCTCTCTAAGTCCTTCCACATCCTCCTCCACCGAAGACCAGCTCTACCACAACCACACCTTCGACGCCATTGCCACAGAGAACCGCCTCAACCAGACTCGTCTCATCCTGGAGTTTGATCAACTCCGTGATCACTACGATCTCTGCCGTGCTGAACTCCAAGACCTCATGGACGAGATTCAATTCCTCAGCCGTGAAAACGAGTTCCTCCGCCTCGCCAACACAAAACTAGTCAAGTACCTTTCTTCTCAAGTCACTATGCAGAACCTTCTCAATCACTCCTCCAGTCAGCAGAAGGCTTCGTTGCTCAACGAACTTCGCCGTCTCAATATCGGAGTTACCGCCGCTGATGAAATCTCCGATGTCAGTCCAACAAGCGTCATGGAACGCAGCAGCCCGGACCGGCTCACTCTGCCAAAGAGCATTTCCGTACGGTCCACCGGCTACCTCAAGCCAAATCAGATCCGAGCCGGTCCAAGTCGTCCAGCACCTGGCCCTCAAACTCCGAGTCAACTCGCTTCCAAATCGCAAACGGTGTATGTACCACCAGCTGGAGCAACACGAAAGAAAGAGGAGCCGGTGGAAGTTGAGGTTTACAACCAAGGAATGTTCAAGACGGAGCTTTGCAACAAATGGCAAGCAACAGGCACGTGTCCATACACAGGAAACTGTCTCTTCGCTCATGGCATTAATGAGTTGCGTCCGGTGATTAGACACCCAAGGTACAAGACTCAAGTTTGCAGGATGGTATTAGCTGGCGACAAGTGTCCCTACGGCCACCGTTGCCACTTCCGCCATTCACTCACTGAGCTGGAGCGAACGTCGTCGCGATGTCAAAACTAG | 1059 | 0.5042 | MQVHMEKEASPASESTVTNSTSSLTTNSQSPPLRSSTESICFDFLRKYPENQSFGTNFASMYRSIFPPKSPTLSLSPSTSSSTEDQLYHNHTFDAIATENRLNQTRLILEFDQLRDHYDLCRAELQDLMDEIQFLSRENEFLRLANTKLVKYLSSQVTMQNLLNHSSSQQKASLLNELRRLNIGVTAADEISDVSPTSVMERSSPDRLTLPKSISVRSTGYLKPNQIRAGPSRPAPGPQTPSQLASKSQTVYVPPAGATRKKEEPVEVEVYNQGMFKTELCNKWQATGTCPYTGNCLFAHGINELRPVIRHPRYKTQVCRMVLAGDKCPYGHRCHFRHSLTELERTSSRCQN* | 353 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte4g00479 | 352 | MobiDBLite | consensus disorder prediction | 9 | 35 | - | - | |
Pte4g00479 | 352 | MobiDBLite | consensus disorder prediction | 221 | 249 | - | - | |
Pte4g00479 | 352 | Coils | Coil | 111 | 145 | - | - | |
Pte4g00479 | 352 | SMART | c3hfinal6 | 313 | 340 | IPR000571 | GO:0046872 | |
Pte4g00479 | 352 | SMART | c3hfinal6 | 275 | 302 | IPR000571 | GO:0046872 | |
Pte4g00479 | 352 | ProSiteProfiles | Zinc finger C3H1-type profile. | 275 | 303 | IPR000571 | GO:0046872 | |
Pte4g00479 | 352 | ProSiteProfiles | Zinc finger C3H1-type profile. | 313 | 341 | IPR000571 | GO:0046872 | |
Pte4g00479 | 352 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 121 | 347 | IPR045877 | GO:0003729 | |
Pte4g00479 | 352 | SUPERFAMILY | CCCH zinc finger | 272 | 307 | IPR036855 | GO:0046872 | |
Pte4g00479 | 352 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 276 | 301 | IPR000571 | GO:0046872 | |
Pte4g00479 | 352 | FunFam | zinc finger CCCH domain-containing protein 15-like | 269 | 308 | - | - | |
Pte4g00479 | 352 | FunFam | Zinc finger protein 36, C3H1 type-like 1 | 309 | 345 | - | - | |
Pte4g00479 | 352 | Gene3D | - | 309 | 346 | - | - | |
Pte4g00479 | 352 | Gene3D | - | 269 | 308 | - | - | |
Pte4g00479 | 352 | SUPERFAMILY | CCCH zinc finger | 309 | 344 | IPR036855 | GO:0046872 | |
Pte4g00479 | 352 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte4g00479 | Pte-Chr4 | 33955734 | 33957947 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte4g00479 | 120 | 345 | C3H Transcription Factor Family | AT1G68200 | 50.202 | 7.53e-64 | 203 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pte4g00479 | zf-CCCH | 2.2e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte4g00479 | K18753 | - | qsa:O6P43_005646 | 385.571 |