Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte4g00467 | ATGGAAGTTGATTTGGAAAACCTCGCGTTTGATATTGATTTCCATCCATCAAACAACCTAGTTGCCGCTGGCCTCATCACTGGTGACCTTCAACTATATCGTTACTGTGCTGATACCTCACCAGAAAGGATATTAAAAGTAAGTGCCCACAATGAGTCTTGTAGAGCTGTTCGATTCATAGATGGTGGACGTGCAATGGTGACATGCTCTCCTGATTGTTCGATACTGGCGACGGATGTTGAAACAGGAGCAACTATAGCTCGCGTTGATGATGCCCATGAGAACGCAATCAACAAGCTGTTAAACTTAAATGAGTCAACTATAGCTTCTGGAGATGATGAAGGATGTGTTAAGGTATGGGACACTAGACAACGTTCTTGCTGCAATTCTTTTGATGTGCATGAAGATTATGTGTCGGACATGACTTTTGCATCGGATGCGATGAAATTACTGACAACAAGTGGTGATGGAACTCTATCAGTATGCAATCTTCGGAGAAATAAAGTCCAAGCTCAATCTGAATTTTCTGAAGAAGAATTATTATCTGTCGTTCTAATGAAGAATGGGCGGAAAGTTGTGTGTGGAACGCAGAATGGAACTCTTATGTTGTATTCATGGGGTTTCTTCAAGGATTGCAGTGATCGATTTATTGGCCTTGCATCTAACTCAATTGACACGATAGTAAAGCTTGACGAAAATAGGCTCATTACTGGATCAGAGAACGGCCTCATCAATTTGGTTGGTATATTACCCAACAGAGTCATCCAGCCAATTGCAGAACACTCAGAATATCCTGTTGAGAACCTTGCCTTGTCTCATGATAAGAAGTTCCTTGGCAGTGTTGCACATGACCAGAAGTTGAAGCTGTGGAATCTGGATGAATTACTGCAAGATTCAGGAAACATGCAAGAGAACGAAGCCGATGCTTCAGACAGTGATGAAGATGAAATGGATGTGGATGACAGTGCATCTAAGTCTAAGAAAGGGACAAAAAGGAAGCCTGCCGCCAATGGGGATGCTCTTGGCAGTTCCAACAGCTTTTTTGCAGATTTGTAG | 1056 | 0.4233 | MEVDLENLAFDIDFHPSNNLVAAGLITGDLQLYRYCADTSPERILKVSAHNESCRAVRFIDGGRAMVTCSPDCSILATDVETGATIARVDDAHENAINKLLNLNESTIASGDDEGCVKVWDTRQRSCCNSFDVHEDYVSDMTFASDAMKLLTTSGDGTLSVCNLRRNKVQAQSEFSEEELLSVVLMKNGRKVVCGTQNGTLMLYSWGFFKDCSDRFIGLASNSIDTIVKLDENRLITGSENGLINLVGILPNRVIQPIAEHSEYPVENLALSHDKKFLGSVAHDQKLKLWNLDELLQDSGNMQENEADASDSDEDEMDVDDSASKSKKGTKRKPAANGDALGSSNSFFADL* | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte4g00467 | 351 | PANTHER | WD REPEAT-CONTAINING PROTEIN 55 | 8 | 334 | - | - | |
| Pte4g00467 | 351 | FunFam | WD repeat-containing protein 55-like | 4 | 224 | - | - | |
| Pte4g00467 | 351 | MobiDBLite | consensus disorder prediction | 302 | 351 | - | - | |
| Pte4g00467 | 351 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 278 | 292 | IPR019775 | - | |
| Pte4g00467 | 351 | Gene3D | - | 229 | 346 | IPR015943 | GO:0005515 | |
| Pte4g00467 | 351 | PIRSF | WD_rpt_55 | 1 | 351 | IPR017422 | - | |
| Pte4g00467 | 351 | MobiDBLite | consensus disorder prediction | 320 | 334 | - | - | |
| Pte4g00467 | 351 | SMART | WD40_4 | 166 | 205 | IPR001680 | GO:0005515 | |
| Pte4g00467 | 351 | SMART | WD40_4 | 124 | 163 | IPR001680 | GO:0005515 | |
| Pte4g00467 | 351 | SMART | WD40_4 | 251 | 291 | IPR001680 | GO:0005515 | |
| Pte4g00467 | 351 | SMART | WD40_4 | 82 | 121 | IPR001680 | GO:0005515 | |
| Pte4g00467 | 351 | SMART | WD40_4 | 40 | 79 | IPR001680 | GO:0005515 | |
| Pte4g00467 | 351 | SUPERFAMILY | WD40 repeat-like | 9 | 291 | IPR036322 | GO:0005515 | |
| Pte4g00467 | 351 | Gene3D | - | 7 | 228 | IPR015943 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte4g00467 | Pte-Chr4 | 33443017 | 33447723 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte4g00467 | 50 | 168 | U-box Gene Family | AT1G04510 | 25.410 | 1.18e-06 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte4g00467 | K24750 | - | gmx:100792826 | 543.502 |