Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00456 ATGGCAAACGACGAGCATCATCAAGTTTTTGATGACAAATTGTCTGTGCTCCTAATCATAATTGGTTCAGTTGCTCTCATTGTCACCATCTACCACTGTGTTTCCTTCTGGTGCTACAGCTGGTGGCAAATCAGTCTGTTCAGCCCAATCGGCAGAGTACTGCGGCGGGGCAGCGTCAATGGCCGGGCTGATCAGGAAACACGAAGCAGTATAGAGAATTCAGTGGCTCACCTCATTCCAGCTCATATATACAAGAAAGGGTTGGATTTAGAAGGGCAAGATATCACTTGTGCTGTGTGCTTGTGTGAGTTTCAAGAAGGTGAAGAATTGAAAACCTTGCCTGAGTGCATGCACAAATTTCATATGCCATGCATAGATATGTGGCTCTATTCTCATTCAAACTGCCCCATCTGCCGCGCCAATGCGACGCCATCTATAGAATTGTTGCAGACTTCATCAGATTCTAGTGATCATCATATGAATAATGCACATCCAACTATAAGAATTGATAGGCGCCAGTTCTTCCAAGAAGGGAAGGGAGGAAGGCAAGGTGAGGAGATGAAGGTTCTTGAGGAAGATCCAAAAGGAGTGCAGAAAGTGAGGGAGTGA 609 0.4548 MANDEHHQVFDDKLSVLLIIIGSVALIVTIYHCVSFWCYSWWQISLFSPIGRVLRRGSVNGRADQETRSSIENSVAHLIPAHIYKKGLDLEGQDITCAVCLCEFQEGEELKTLPECMHKFHMPCIDMWLYSHSNCPICRANATPSIELLQTSSDSSDHHMNNAHPTIRIDRRQFFQEGKGGRQGEEMKVLEEDPKGVQKVRE* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00456 202 Pfam Ring finger domain 96 139 IPR001841 -
Pte4g00456 202 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 142 IPR044675 -
Pte4g00456 202 SUPERFAMILY RING/U-box 91 146 - -
Pte4g00456 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 145 IPR013083 -
Pte4g00456 202 CDD RING-H2_EL5-like 97 139 - -
Pte4g00456 202 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Pte4g00456 202 MobiDBLite consensus disorder prediction 178 202 - -
Pte4g00456 202 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00456 Pte-Chr4 32323559 32326559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00456 16 166 C3H Transcription Factor Family AT5G17600 36.095 6.63e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00456 - - zju:107413516 164.081