Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00442 ATGTCCACCGCTCTCGACATGTCACTCGACGACGTTATCAAGCAATCAAAGGCTCGCCAAGACGGCAACTACGGTTTCTCTCATGGTAGAGTTATACGTCCCAACCATCGTCTCTTCAGTCGTTGGCCGCTTCGAACTAGCCCATACCCTGTTCCAGAGTTGCATGTTATGGAGCCTTGGCTGTTTCAACAGGAAATGGCGCTTGGAGGAGGTTCCAACTCTGACATTGGAACCAAGCTCTACATATCCAACTTGGAGTATGGAGTTTCTAACGAAGACATCAAATTGCTTTTTTCAGAAATTGGAGAACTGAAACGCTACTCGATTCATTATGACAAAAGTGGGAGGTCAAAGGGTACAGCAGAAGTTGTATATGTACACAAGTCTGATGCACTGACAGCTATGAAGAGGTATGACAATGTGAAACTTGATGGAAAGCCACTAAAAATTGAGCTTGTGGGAGTGAATATGGTTGGTCTTGCTGCTCTTCCCCCAACTCCAAATGGTATTCTGGGAAGACCTAAGGATGTCTTCAAAAGAGTTCAAGGAAGTGGTTTTAGGAGCTTAGTGCGCAGTAATACGGGTGGCAATCTTATTACAAGAGACCATGGACAGCCTAGGAGCCGTGGTGGGATGGTGACTGCAAAAGATCTTGATGCTGACTTAGATAATTACCGCCTTCAAGCTATGAAGATAAAAAAGAATGAACAGTGA 714 0.4482 MSTALDMSLDDVIKQSKARQDGNYGFSHGRVIRPNHRLFSRWPLRTSPYPVPELHVMEPWLFQQEMALGGGSNSDIGTKLYISNLEYGVSNEDIKLLFSEIGELKRYSIHYDKSGRSKGTAEVVYVHKSDALTAMKRYDNVKLDGKPLKIELVGVNMVGLAALPPTPNGILGRPKDVFKRVQGSGFRSLVRSNTGGNLITRDHGQPRSRGGMVTAKDLDADLDNYRLQAMKIKKNEQ* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00442 237 MobiDBLite consensus disorder prediction 192 212 - -
Pte4g00442 237 CDD RRM_THOC4 78 152 - -
Pte4g00442 237 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 226 - -
Pte4g00442 237 SMART rrm1_1 79 151 IPR000504 GO:0003723
Pte4g00442 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 149 IPR000504 GO:0003723
Pte4g00442 237 Gene3D - 67 215 IPR012677 -
Pte4g00442 237 SUPERFAMILY RNA-binding domain, RBD 24 152 IPR035979 GO:0003676
Pte4g00442 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Pte4g00442 237 Coils Coil 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00442 Pte-Chr4 31767802 31770646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00442 71 153 Eukaryotic Initiation Factors Gene Family AT2G23350 32.530 3.40e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00442 K12881 - qsa:O6P43_005698 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00442 4 31767802 31770646 Pte4g00442 4 31767802 31770646 RCT